Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0049 ATGATGCTAGGGGAACACAATCGATCAAATCCAACCATCCATGTACCTCCATGGCAGGATCCAACGGATGATATCTACTCTTCTTGCTTCACTAACGACGTTACTGACGGCAATGCTGCTGCCGCTGATTACTCTCCCTATTACATGCAGGAAGCGTTAACAGCGCTGCGTCGTTACCTGCCGTCGAACGAAGCTGATTCTCACTTTGACTCTGAGATTCCGGGGCGTGAATCAGACGCGCCGGTTGACGCGTACTCATGTGATCAGTTCCGTATATACGAGTTCAAGATACGTAAGTGTGCACGTGGCAGGTCACATGACTGGACCGAATGTCCGTACGCTCATCCCGGAGAGAAGGCTCGCCGGAGAGATCCCCGGAAGTTTCACTACTCCGGCACGGCGTGCCCTGATTTTCGTAAAGGTAATTGCAAGAAAGGTGACGCGTGTGAGCACGCGCATGGAGTTTTCGAGTGCTGGCTTCACCCGGCGCGTTACCGCACGCAGCCATGCAAAGACGGAACCAGTTGCAGGAGAAGAGTTTGCTTCTTCGCTCACACGCCGGAGCAGCTTCGAATCGTGCCTAATCATAGCCCTAGAAGCATTGATTCATACGACGGTTCTCCTATGAGAAACGGAACGTTGACGTTTATGTCATCTCCGATTTCTATCTCGCCGCCGGTGAGTCCTCCATCTGAATCGCCGCCCATTTCTCCGTTGACAAGAAGCTCAATGAATGACATGGTGGCTTCTCTGCGTAACTTACAACTTGGGAAGGTGAAATCAATGCCTAGTAAAAGAAACGTTATTCCAATAGGCTCACCCGGGTTCGGGTCACCGAGAGTTTCGTTGCTTCGAGCCGGGTTTCTTAGCCTCCCTTCTACACCAACCCAGGTTCCGGGTCGATGTGGCGTCAGCCACTTCGACCAATGGGACCAGGGTCGCGGGGAGGAACCGGTCATGGAAAGGGTTGAGTCTGGAAAGGGAATAAGGGCTAAGATGTTTGAGAAATTGAGCAAAGAGAATTCTCTTGATGGGTCGGGTCAAGTTTCGGATGGAGCCCCAGATGTTGAGTGGGTTTCTCAGCTGTTGGATTAA 1095 0.5187 MMLGEHNRSNPTIHVPPWQDPTDDIYSSCFTNDVTDGNAAAADYSPYYMQEALTALRRYLPSNEADSHFDSEIPGRESDAPVDAYSCDQFRIYEFKIRKCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEHAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRIVPNHSPRSIDSYDGSPMRNGTLTFMSSPISISPPVSPPSESPPISPLTRSSMNDMVASLRNLQLGKVKSMPSKRNVIPIGSPGFGSPRVSLLRAGFLSLPSTPTQVPGRCGVSHFDQWDQGRGEEPVMERVESGKGIRAKMFEKLSKENSLDGSGQVSDGAPDVEWVSQLLD* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0049 364 PANTHER UNKEMPT FAMILY MEMBER 7 363 IPR045234 -
Lan3g0049 364 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Lan3g0049 364 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Lan3g0049 364 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
Lan3g0049 364 Gene3D - 129 193 - -
Lan3g0049 364 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0049 Lan-Chr3 326685 328274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0049 85 268 C2H2 Transcription Factor Family AT5G12850 50.000 3.68e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan3g0049 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0049 - - aprc:113867365 557.37