Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0028 ATGACTCCTAAAAAGATTACATGGAAGTCTTGCATATTGATCTTAGACTGTTGCAAGATTAAATGTCCATTGGAGGAATCAAAGAAACATGTTTTAAAAGAAGGTTCTTTTAAGAGGCTATGCATGTCAGATGCAAGCAATCCTAGTTCCAATCATGCCATAAATGTTGAAGATCTTTCAATTTCTCTAGCTGGTTCAAAATTGTATGCATTCGCACTAGAGGAGCTAAGAGAAGCTACACATAATTTCTCATGGAGTAATATGCTAGGTGAAGGTGGGTTTGGACCTGTGTACAAGGGTTTTTTTGATGATAAACTTAGGCCTGGTTTGGACCCTCAGACTGTAGCTGTCAAAAGATTGGACTTGGATGGCTTGCAAGGTCACAAGGAGTGGCTGGCAGAAATTATGTTTCTGGGGCAATTAAGGCATCCACATCTTGTTAAGTTAATAGGATATTGTTATGAGGATGAGAACAGGCTTTTGGTATATGAACACATGACAAGAGGCTCTTTGGAGAATCAACTTTTTAGAAGATATTCCGGTACGATGCCATGGTCAACTAGGATGAGAATTGCACTAGGAGCTGCTAAGGGACTTGCCTTCCTTCATGGAGCAGATAAACCAATAATATACAGAGATTTCAAAGCTTCAAACATCTTACTAGACTCTGATTTCACAGTTAAACTCTCAGACTTTGGGCTAGCTAAGGAAGGCCCAGAAGGGGAAGAGACACATGTAACAACACGCATAATGGGAACACATGGCTATGCTGCTCCTGAGTACATGATGACAGGTCATCTTACCACTAAGAGTGATGTGTATAGCTATGGAGTGGTACTATTGGAATTGGTAACAGGAAAACGTGTAGTGGATAAGTTACAATCAAATAAAGGGAGGAGCTTGGTGGAATGGGCAAGGCCTATGTTGAAAGATCAAAGCAAGTTGCATGGTATCATAGACCATAGACTGGAAGGAGAATTCCCAATGAAAGGAGCTATGAAAGTTGCTATGTTGGCTTATAAATGCTTGAGTCACCACCCACATACAAGGCCTACCATGTCTCATGTGGTCAACATATTGGAGCCACTTCAGGACTTGGATCATATTTTCATTGCAACATAG 1122 0.4064 MTPKKITWKSCILILDCCKIKCPLEESKKHVLKEGSFKRLCMSDASNPSSNHAINVEDLSISLAGSKLYAFALEELREATHNFSWSNMLGEGGFGPVYKGFFDDKLRPGLDPQTVAVKRLDLDGLQGHKEWLAEIMFLGQLRHPHLVKLIGYCYEDENRLLVYEHMTRGSLENQLFRRYSGTMPWSTRMRIALGAAKGLAFLHGADKPIIYRDFKASNILLDSDFTVKLSDFGLAKEGPEGEETHVTTRIMGTHGYAAPEYMMTGHLTTKSDVYSYGVVLLELVTGKRVVDKLQSNKGRSLVEWARPMLKDQSKLHGIIDHRLEGEFPMKGAMKVAMLAYKCLSHHPHTRPTMSHVVNILEPLQDLDHIFIAT* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0028 373 CDD STKc_IRAK 89 363 - -
Lan3g0028 373 Gene3D Transferase(Phosphotransferase) domain 1 166 369 - -
Lan3g0028 373 Gene3D Phosphorylase Kinase; domain 1 44 165 - -
Lan3g0028 373 ProSitePatterns Serine/Threonine protein kinases active-site signature. 209 221 IPR008271 GO:0004672|GO:0006468
Lan3g0028 373 ProSiteProfiles Protein kinase domain profile. 83 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan3g0028 373 Pfam Protein tyrosine and serine/threonine kinase 85 360 IPR001245 GO:0004672|GO:0006468
Lan3g0028 373 PANTHER KINASE 1B 21 368 - -
Lan3g0028 373 PANTHER OS01G0588500 PROTEIN-RELATED 21 368 - -
Lan3g0028 373 SUPERFAMILY Protein kinase-like (PK-like) 62 361 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0028 Lan-Chr3 231460 233743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0028 71 360 Glycoside Hydrolase AT3G07070 52.901 1.26e-101 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan3g0028 PK_Tyr_Ser-Thr 3.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0028 - - gmx:100802636 609.372