Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0022 ATGAACGACCTTCTTACAGACTCATTTGTTGGTGAGGTTAATAATGGCCAAACTTCTAGACAAGGTGATATTGAAATGGGATCGCAAGTTCAGAGAAGCAACTCTGATATGGGAATGGAAGCTTTTAATAAGCAGATCCACGAGGCTGATAAACAAATTGATAAGCTCTCTGTGCTTCTTCAAAAGCTGAAGGAAGCTAATGAGGAATCAAAAGCTGTTACAAAAGCGGCTGCGATGAAAGCTATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAAGATTGCAAATGGTGTCAAAACAAGAATAGAAGCTATAAACAAAGATAATCTAAACAACAGGCAAAAGCCTGGTTGTGAGAAGGGAACAGGTATTGATAGAGCAAGGATGAACATGACAAATGCTTCGACTAAAAAGTTCAAGGATCTCATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAAGTTGTGGAGAGAAGAGTTATTACAGTCACGGGAACTAGGCCAGATGATGAGACAATTGATCACCTGATAGAGACCGGAAACAGTGAACAAATCTTCCAGCAGGCAATTCTAGAAGCAGGCCGAGGACAGGTTGTAAGCACAGTTGAAGAAATTCAGGAGAGACATGACGCTGTGAAAGAAATTGAGAAAAAGCTTCTTGATTTACATCAGATTTACCTTGACATGGCAGTCTTAGTTGATGCTCAAGGGGAAATTTTAGACAACATCGAAAGTCAGGTGAACAACGCAGTTGATCATGTCCAGAGAGGGACATCTGCGCTACAAAGTGCTAAGAAACTTCAGAAGAATTCTCGGAAATGGATGTGCATTGCCATCATTATACTGTTGATAATAGTAGCGGTCATAGTTGTTGGTGTTCTCAAACCCTGGAAGAGTAGCAATGGTGCTTAA 933 0.4019 MNDLLTDSFVGEVNNGQTSRQGDIEMGSQVQRSNSDMGMEAFNKQIHEADKQIDKLSVLLQKLKEANEESKAVTKAAAMKAIKKRMEKDIDEVGKIANGVKTRIEAINKDNLNNRQKPGCEKGTGIDRARMNMTNASTKKFKDLMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILEAGRGQVVSTVEEIQERHDAVKEIEKKLLDLHQIYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQSAKKLQKNSRKWMCIAIIILLIIVAVIVVGVLKPWKSSNGA* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0022 310 Gene3D - 203 302 - -
Lan3g0022 310 CDD SNARE_syntaxin1-like 208 269 - -
Lan3g0022 310 PANTHER SYNTAXIN 14 301 IPR045242 -
Lan3g0022 310 SUPERFAMILY t-snare proteins 36 264 IPR010989 GO:0016020|GO:0016192
Lan3g0022 310 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 14 301 - -
Lan3g0022 310 SMART SynN_4 34 160 IPR006011 GO:0016020
Lan3g0022 310 Coils Coil 39 76 - -
Lan3g0022 310 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lan3g0022 310 Gene3D - 34 163 - -
Lan3g0022 310 Pfam SNARE domain 245 297 IPR000727 -
Lan3g0022 310 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lan3g0022 310 SMART tSNARE_6 204 271 IPR000727 -
Lan3g0022 310 CDD SynN 39 196 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0022 Lan-Chr3 212577 215965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0022 1 310 SNARE and Associated Proteins AT3G03800 61.290 6.57e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0022 K08486 - gmx:100800991 523.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1890 6 29980070 29984056 Lan3g0022 3 212577 215965 LSH
Lan10g0035 10 194387 197760 Lan3g0022 3 212577 215965 LSH