Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0021 ATGGAGGTGCCTTTGTTCACAAGGCATGGTGGTGTCAAGGTTATGAGTAAGTTGCTGTTATTCCTCTTGGTTTTCTGCTCCTCGATTCCGATGGAAGTGGTTGGGAGCACAGGAACTACTATTGTAAATTCTACTGCTTCATCTTCAAGACCAAGTGTTTTGAGAATTGGAGCCTTATTTACTCTTAATTCTGTCATTGGAAGATCTGCTAAACCTGCAATCATGGCTGCTATTGATGATGTTAATGCTAATACCACCATTCTCCCTGGCATTAAATTGGAAGTTATTTTACATGATACAAATTGCAGCGGTTTTCTTGGAACAGTGGAAGCTCTGCAGCTGATGGAGAATGATGTGGTTGCTGCAATTGGTCCACAGTCTTCGGGAATAGCCCATATAATCTCTCAAGTTGCTAATGAACTTCATGTTCCTCTTATTTCATTTGGTGCAACAGACCCTTCTCTATCTTCACTTCAGTTCCCTTATTTCATCAGAACCACTCAGAATGACTATTTCCAAATGCATGCAGTTGCTGACTTGATTGATTACTATAAATGGAGGGAGGTAATAGCCATCTATGTAGATGATGATAATGGAAGGAATGGAGTTTCTGTATTAGGAGATGCTTTGGCAGAAAAACGTGCAAAGATTTCTTTTAAGGCTGCTTTCACTCCTGGTGCACCCAAAAGTGATATCAGTGACTTGTTAAATGGAGTTAACTTAATGGAATCACGCATCTATGTTCTTCATGTTAATCCTGATTCCGGTTTGGAAATTTTCTCTATTGCCAAGAAGCTAGGAATGATGACAAGTAGTTATGTGTGGATTGCGACGAATTGGCTTTCTTCGGTGTTGGATTCGTCAGAGAATGCAGGCACTAACAGTGACACACTGAATCTCTTACAAGGGGTTGTTGCCTTTCGTCACCACACACCAGATACTAATCTCAAAAGGAGTTTCATCTCTAGGTTGAAAAGCCTTAAAGACAAGGAGACTAAAAACTTCAATTCTTATGCACTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATGTTATTCTCAATGAAGGTGGGAACATATCTTTCTCATCTGATCCTGTATTGCATAACACAAATGGAAGCATGTTGCATTTATCATCGCTTCGTGTTTTCAATGGTGGCCAACAGTTTCTGCAGACAATTTTGAGAACAAACTTCACCGGTATCAGTGGTCAGATTCAGTATGATACGGATAAGAATTTAATCCATCCAGCATATGATATTCTGAATATCGGCGGACTTGGATCACGTAGAATTGGTTATTGGTCTAATTACTCTGGTCTCTCAGTTATAGCTCCAGAAATTTTGTATGAGCAACCACCTAACACTTCAAGAAGTAGTCAACAACTTTTTAGTGTTATATGGCCTGGAGATACTACAAATACACCAAAGGGGTGGGTATTCCCTAACAATGGAAAGCCACTGAGGATAGCAGTGCCTAATAGAGTAAGCTACTTGGACTTTGTTTCCGAGGAGAAGAACCCTCCTGGTGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAGTATATGCTATTCGGAAACGGTGATATAAATCCTGACTATAACGACCTTGTCTATCAGGTTTCACAAAATAACTATGATGCAGCTGTTGGAGATATTACAATAGTGACAAACAGGACAAGGTTTGTGGATTTTACTCAACCTTACATGGAATCAGGGCTGGTTGTTGTTGTTCGTGTAAAGGAGATAAATTCAAGTGCTTGGTCTTTCCTCAAGCCATTCACTGCTGAAATGTGGTGTGTTACAGCTGCCTTCTTTCTTTTTGTGGGAACTGTTGTATGGATTCTCGAGCACAGGCACAATCACGAGTTTCGTGGTACACCAAGGCAACAACTCAACACAATCTTTTGGTTTACTTTCTCAACAATGTTTTTCGCACACAGAGAGAATACTGTGAGTAATCTTGGGAGAGTGGTGATGATCATATGGCTTTTTGCGGTGCTAATAATCACTTCAAGCTATACAGCTAGCTTAACATCCATCCTCACAGTGCAACAACTTACATCTGAAATTGAAGGCATTGATAGCTTGATATCGGATACTCAACCAATTGGAATTCAAGAAGGGTCATTTGCAAAGAAGTATCTCATAGATGAACTCAATGTAGCACCATCTAGGATAGTTTCTTTGAAAAACCAGGACGCATATATCGATGCCCTTACGCGTGGACCAAAAAATGGAGGGGTTATGGCCATTGTTGACGAGCTTCCTTATATTGAACTCTTCATGTCCAATACAAATTGTGAATTCAGAATAGTTGGGCAGGAGTTCACTAGAAGTGGTTGGGGATTTGCATTCCAGAGAGACTCTCCCCTTGCTGTTGATTTGTCAACAGCAATTCTCCAACTAGCTGATGATGGTGATTTGCAAAAGATTCATGACAAGTGGCTTTTGAAAAATGTCTGTGTTGCACAACTCAGTAGTGATCAATCATATGAACTATCTCTGAGTAGCTTCTGGGGCCTCTTTCTTATTATTGGCATTGCATGTTTCCTTGCCTTGACTCTATTCTTTATTAAAGTGATGTGTCAGTATAAGAAATTCAGCACTGACACTGAGGATTCTGCTGATGAGATTCAACCACATGGGTCTAGAAGGACTACCCGAATGACTTGCTTCAAGGGCTTCATCGATTTTATAGATAGGAGAGAAGAAGATGTCAAAGAGATATTTAGACAGAACACTAAAAGAAAGGAAACAACCCAAACCTCTGATGATCCATCAACTTCACATATCTAA 2844 0.4012 MEVPLFTRHGGVKVMSKLLLFLLVFCSSIPMEVVGSTGTTIVNSTASSSRPSVLRIGALFTLNSVIGRSAKPAIMAAIDDVNANTTILPGIKLEVILHDTNCSGFLGTVEALQLMENDVVAAIGPQSSGIAHIISQVANELHVPLISFGATDPSLSSLQFPYFIRTTQNDYFQMHAVADLIDYYKWREVIAIYVDDDNGRNGVSVLGDALAEKRAKISFKAAFTPGAPKSDISDLLNGVNLMESRIYVLHVNPDSGLEIFSIAKKLGMMTSSYVWIATNWLSSVLDSSENAGTNSDTLNLLQGVVAFRHHTPDTNLKRSFISRLKSLKDKETKNFNSYALYAYDSVWLAAHALDVILNEGGNISFSSDPVLHNTNGSMLHLSSLRVFNGGQQFLQTILRTNFTGISGQIQYDTDKNLIHPAYDILNIGGLGSRRIGYWSNYSGLSVIAPEILYEQPPNTSRSSQQLFSVIWPGDTTNTPKGWVFPNNGKPLRIAVPNRVSYLDFVSEEKNPPGVKGYCIDVFEAAINLLPYPVPRQYMLFGNGDINPDYNDLVYQVSQNNYDAAVGDITIVTNRTRFVDFTQPYMESGLVVVVRVKEINSSAWSFLKPFTAEMWCVTAAFFLFVGTVVWILEHRHNHEFRGTPRQQLNTIFWFTFSTMFFAHRENTVSNLGRVVMIIWLFAVLIITSSYTASLTSILTVQQLTSEIEGIDSLISDTQPIGIQEGSFAKKYLIDELNVAPSRIVSLKNQDAYIDALTRGPKNGGVMAIVDELPYIELFMSNTNCEFRIVGQEFTRSGWGFAFQRDSPLAVDLSTAILQLADDGDLQKIHDKWLLKNVCVAQLSSDQSYELSLSSFWGLFLIIGIACFLALTLFFIKVMCQYKKFSTDTEDSADEIQPHGSRRTTRMTCFKGFIDFIDRREEDVKEIFRQNTKRKETTQTSDDPSTSHI* 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0021 947 Pfam Ligand-gated ion channel 834 865 IPR001320 GO:0015276|GO:0016020
Lan3g0021 947 Gene3D - 73 419 - -
Lan3g0021 947 PANTHER GLUTAMATE RECEPTOR 3.4 42 929 - -
Lan3g0021 947 Gene3D - 798 831 - -
Lan3g0021 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 67 83 - -
Lan3g0021 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 127 155 - -
Lan3g0021 947 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 342 354 - -
Lan3g0021 947 SUPERFAMILY Periplasmic binding protein-like II 466 836 - -
Lan3g0021 947 MobiDBLite consensus disorder prediction 926 947 - -
Lan3g0021 947 CDD GluR_Plant 489 832 - -
Lan3g0021 947 Gene3D - 169 444 - -
Lan3g0021 947 Gene3D - 603 725 - -
Lan3g0021 947 PIRSF IGluLR_plant 13 946 IPR017103 -
Lan3g0021 947 Pfam Bacterial extracellular solute-binding proteins, family 3 548 833 IPR001638 -
Lan3g0021 947 Gene3D - 486 602 - -
Lan3g0021 947 SUPERFAMILY Periplasmic binding protein-like I 48 483 IPR028082 -
Lan3g0021 947 CDD PBP1_GABAb_receptor_plant 55 446 IPR044440 -
Lan3g0021 947 Gene3D - 756 797 - -
Lan3g0021 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 929 - -
Lan3g0021 947 Pfam Receptor family ligand binding region 71 427 IPR001828 -
Lan3g0021 947 SMART GluR_14 492 834 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0021 Lan-Chr3 208009 211946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0021 50 799 Ion Channels AT1G05200 68.000 0.0 1104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0021 K05387 - gmx:100799912 1387.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1884 6 29911747 29916113 Lan3g0021 3 208009 211946 LSH
Lan3g0021 3 208009 211946 Lan8g1539 8 22458147 22464227 PCT
Lan3g0021 3 208009 211946 Lan13g0506 13 3756344 3761603 PCT