Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0019 ATGATGAGAATAATCTCCAACAACAACAATAACAACAACAACAACAATGAAGAGGTGGCAAATGATTACGAAGGTTCTTTGAAGAAAGGACCGTGGACACCAGATGAAGATGCGATTTTAATAGAATACGTGAACACATATGGTGAAGGGAATTGGAATTCAGTTCCAAAGAATTCAGGATTGTCAAGGTGTGGTAAAAGTTGTAGACTCAGGTGGGCCAATCATCTTAGGCCAAATCTTAAGAAAGGTGCATTTTCTCCAGAAGAAGAACGAGTTATTGTTGATCTTCACGCCAAACTCGGAAACAAATGGGCTCGAATGGCCTCACAGTTACCTGGCAGGACTGACAATGAAATAAAGAACTTTTGGAATACGAGAATAAAAAGGCGAGAGAGAGCGGGTTTACCAATTTACCCTCCAAAAGTTATACGTGATGCAACTCTCTACCATCTACGAGAGGAGCAATATTTTGAAAAACCTTACAATTCTTCTCTTACATCTTCATCATTTCCTCCACTATTATCTTCTTATCCTAAGAAGTTGAATGCCTCAAACCATTACCATGCTCTTGTAAACCCTAAGAAGTTGAATAACTCAAACCATTACCATGCTCTTGTAAACCCTAAAAAGAACCAACCTATTCCTCTATATGGTTCATCATCCAATTTGTTCAACTACCATGGGTTTGTTGTTTCTAATAATTCTGCTCAACCTGTTTCACATGGTTCCCAATACTTTAATAATGGTTTCAATATAAGTTCTATCATGCCTCCATTGGCGCCAAGCTCGGTCTCTTCAAGCCAAACACCACCCGACTCGGTTACTCCAGCTTCATCCAATGTTAGCGGTGTTGATGGTTTCATGGGAGCTTCAAGCAAGGTTAACAATGAACAATACGAGGTTGCACCATTTTCTCTTGAAGGAAATAGGAGCTTGTTGGGTGCTTTAGTTGTGGAGGGTCAAAGTATTTTACGCAACAACAATACAAGGAGTGAGGATTCAACCGTAGTAACAGCAGCAGAGAAATCATCTAACAAGAGGAAAAGTATTGTGATTATGGAAAATGCAGAGGAGAGAGGCACTACTGTTGATTCAGCCTTGAAGAAGAAGAACAGTGGAAAATCTAGTAATGAAATCCCCATGACCTCATCAGGGAAGAAACAAAGTGGTAAGGACCCAACATTGGAGGAGATAGATGTGAGCTGGGATGATGACTTGTGTAGCCTGCTGAACAATTTCCCGACAGAAATGCCAACGCCAGAGTGGTACAGTGGAGGTGATAAAGCTGAATCATCGGGACATCAAAAAACTCAAACCAATACTCCTCCACCTGGCCCCACCATCGAGCCAGAATTAGGATGGAACAACATGCCTAGCATATGCTAA 1386 0.4105 MMRIISNNNNNNNNNNEEVANDYEGSLKKGPWTPDEDAILIEYVNTYGEGNWNSVPKNSGLSRCGKSCRLRWANHLRPNLKKGAFSPEEERVIVDLHAKLGNKWARMASQLPGRTDNEIKNFWNTRIKRRERAGLPIYPPKVIRDATLYHLREEQYFEKPYNSSLTSSSFPPLLSSYPKKLNASNHYHALVNPKKLNNSNHYHALVNPKKNQPIPLYGSSSNLFNYHGFVVSNNSAQPVSHGSQYFNNGFNISSIMPPLAPSSVSSSQTPPDSVTPASSNVSGVDGFMGASSKVNNEQYEVAPFSLEGNRSLLGALVVEGQSILRNNNTRSEDSTVVTAAEKSSNKRKSIVIMENAEERGTTVDSALKKKNSGKSSNEIPMTSSGKKQSGKDPTLEEIDVSWDDDLCSLLNNFPTEMPTPEWYSGGDKAESSGHQKTQTNTPPPGPTIEPELGWNNMPSIC* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0019 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 26 76 IPR017930 -
Lan3g0019 461 SMART sant 28 78 IPR001005 -
Lan3g0019 461 SMART sant 81 129 IPR001005 -
Lan3g0019 461 Gene3D - 26 82 - -
Lan3g0019 461 ProSiteProfiles Myb-like domain profile. 77 127 IPR001005 -
Lan3g0019 461 MobiDBLite consensus disorder prediction 353 393 - -
Lan3g0019 461 CDD SANT 84 125 IPR001005 -
Lan3g0019 461 MobiDBLite consensus disorder prediction 260 282 - -
Lan3g0019 461 CDD SANT 31 76 IPR001005 -
Lan3g0019 461 SUPERFAMILY Homeodomain-like 27 123 IPR009057 -
Lan3g0019 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 77 131 IPR017930 -
Lan3g0019 461 MobiDBLite consensus disorder prediction 1 21 - -
Lan3g0019 461 MobiDBLite consensus disorder prediction 366 389 - -
Lan3g0019 461 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 12 433 - -
Lan3g0019 461 Pfam Myb-like DNA-binding domain 29 76 IPR001005 -
Lan3g0019 461 Pfam Myb-like DNA-binding domain 82 125 IPR001005 -
Lan3g0019 461 MobiDBLite consensus disorder prediction 417 461 - -
Lan3g0019 461 ProSiteProfiles Myb-like domain profile. 24 76 IPR001005 -
Lan3g0019 461 Gene3D - 84 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0019 Lan-Chr3 198941 202693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0019 13 146 MYB Transcription Factor Family AT5G06100 68.889 2.36e-63 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan3g0019 Myb_DNA-binding 4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0019 K09422 - gmx:100784779 394.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1877 6 29856794 29861133 Lan3g0019 3 198941 202693 LSH