Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0015 ATGGACATGATGGGAACCGAACGTGTTTGTTATGTTCATTGCAACTTCTGCAATACCACTCTAGCGGTGAGTGTTCCATGCAGCAGTTTGCTGACCATAGTGACAGTTAGATGTGGGCACTGTGCCAATTTGCTATCAGTTAACATGGGAGCATCCCTTCAAACACTTCCTCCCCAAGACCCTCAGAAACAACACTTAGGCTTTGAAGAAGCAAACAGCAAGGAAGAGGGATCATCTTCAAAATGCAACAAATTTGCAGCATTTCAGGCTGTAGAACACCAGCAACATCAACATAGGATTCCTCCAATTCGTCCTCCAGAGAAGAGACAACGTGTTCCTTCTGCTTATAATCGTTTCATTAAAGAGGAAATCCAAAGAATTAAGGCTAGTAATCCAGATATGAGGCACAGGGAAGCTTTCAGCACAGCAGCCAAAAACTGGGCTCATTTCCCTCATATTCAGTTTGGGTTAAAGCTGGATTCCAACAAACAAACAAACAAACCTGCTCTATGA 513 0.4327 MDMMGTERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQTLPPQDPQKQHLGFEEANSKEEGSSSKCNKFAAFQAVEHQQHQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDMRHREAFSTAAKNWAHFPHIQFGLKLDSNKQTNKPAL* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0015 170 MobiDBLite consensus disorder prediction 56 80 - -
Lan3g0015 170 Gene3D High mobility group box domain 102 164 IPR036910 -
Lan3g0015 170 Pfam YABBY protein 6 157 IPR006780 GO:0007275
Lan3g0015 170 PANTHER PROTEIN YABBY 6-RELATED 1 166 IPR006780 GO:0007275
Lan3g0015 170 PANTHER AXIAL REGULATOR YABBY 2-RELATED 1 166 - -
Lan3g0015 170 SUPERFAMILY HMG-box 102 151 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0015 Lan-Chr3 173284 177380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0015 4 164 C2C2-YABBY Transcription Factor Family AT1G08465 62.275 7.53e-67 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lan3g0015 YABBY 1.7e-70 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0015 K25796 - gmx:100500091 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0020 10 105432 110846 Lan3g0015 3 173284 177380 LSH
Lan3g0015 3 173284 177380 Lan7g0406 7 2843342 2848181 PCT
Lan3g0015 3 173284 177380 Lan8g1565 8 22686728 22693299 PCT
Lan7g0406 7 2843342 2848181 Lan3g0015 3 173284 177380 PCT
Lan8g1565 8 22686728 22693299 Lan3g0015 3 173284 177380 PCT