Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0013 ATGGATGAAATTGAAGTTCCTACCCATTTTCTATGTCCCATTTCCCTACAACTTATGAGAGACCCTGTCACTGTCTACACAGGAATCACTTATGATAGAGAAAACATTGAGAAATGGTTGTTTTCATGCAACAACAACAACAACAATAGCAGAACTTGTCCTGTTACAAAGCAATCTTTGTTAAACACAGATCTTACACCAAACCACACTCTACGCCGTTTCATCCAATCTTGGTGCACCCTTAATGCCTCTCTTGGAGTTGAACTCATTCCAACTCCAAAGTCACCTATTGACAAATCTCAAATCCTGAATCTCATTAATGAAACTAAGAGGTTCCCTCAAAAGCAACTCAAATGCCTTAAAAGGCTTAGATCTTTTGTTTTTGAAGGTGAAAGGAACAAAAGTTGTTTAGAGTCTGCAGGTGCAATAGACTTCTTGGCTTCAACCATGAACAATATTAACAAAGTCCAACAAGATCCAACTCTTCTTACCAAGTTGCTAAATTGCAGTTGTAATAAACTCAGTTGCATAGATTGCAAAAATTGTAATATTACAGTTGCATACTGCAATTTAGAAACTTGTAGACTGAGTGAAGCTGCTGTTGAAGTCTTATTTCACATTAGCCCTTCTGAAGTTATGCTTAAGAAGCTTATAAACAATGAGGAAATTCAGTTTGTTGAGTCTTTGTTTCAAGTTTTGAGGGTTGGGAATTACCAATCAAGAGCTTATGCAACTATGCTATTGAAATCAGCTTTTGAGGTGGCTAATCCAATACAATTGATAAGTGTGAAAAGCATGTTGTTTGTGGAAATAATGAGAGTGCTACGTGATAAGATTTCACAGCAAGCTTCGAAGGCTGCATTGAAGATAATTGCAGAGCTTTGTGAATGGGGTAGAAATAGAATAAAAGGAGTTGAAGGTGGTGGTGTTTCAGTGCTGATTGAGCTTCTTCTTGATACACAAGAAAGAAGAGCATGTGAACTAATACTAATAGCTTTGGATAAACTTTGTGGTTGTGCTGAAGGGAGGGCTGAGTTAGTGAACCATGGGGCAGGTGTGGCCATTGTATCCAAGAAGGTTCTAAGGGTTTCTTATGTGGCAAGTGATAGAGGAGTTAAAATATTGTCCTCTATTTGTAGGTACAGTGCCACTTCAAGAGTCCTTCATGAAATGTTACAAGTTGGGGCAGTGTCAAAGCTATGCTTAGTGCTTCAAGTCAATACTAGTTCCAAGACTAAAGAGAGGGCTAAGGAGATACTCAAATTGCATTCTATGCTTTGGAAGAACTCCCCTTGTATTCCTCTACATTTACTCTCATCTTATCCATGA 1329 0.3815 MDEIEVPTHFLCPISLQLMRDPVTVYTGITYDRENIEKWLFSCNNNNNNSRTCPVTKQSLLNTDLTPNHTLRRFIQSWCTLNASLGVELIPTPKSPIDKSQILNLINETKRFPQKQLKCLKRLRSFVFEGERNKSCLESAGAIDFLASTMNNINKVQQDPTLLTKLLNCSCNKLSCIDCKNCNITVAYCNLETCRLSEAAVEVLFHISPSEVMLKKLINNEEIQFVESLFQVLRVGNYQSRAYATMLLKSAFEVANPIQLISVKSMLFVEIMRVLRDKISQQASKAALKIIAELCEWGRNRIKGVEGGGVSVLIELLLDTQERRACELILIALDKLCGCAEGRAELVNHGAGVAIVSKKVLRVSYVASDRGVKILSSICRYSATSRVLHEMLQVGAVSKLCLVLQVNTSSKTKERAKEILKLHSMLWKNSPCIPLHLLSSYP* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0013 442 SMART Ubox_2 9 78 IPR003613 GO:0004842|GO:0016567
Lan3g0013 442 Gene3D - 100 424 IPR011989 -
Lan3g0013 442 ProSiteProfiles U-box domain profile. 5 85 IPR003613 GO:0004842|GO:0016567
Lan3g0013 442 SUPERFAMILY ARM repeat 112 416 IPR016024 -
Lan3g0013 442 SUPERFAMILY RING/U-box 3 82 - -
Lan3g0013 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 86 IPR013083 -
Lan3g0013 442 PANTHER WDSAM1 PROTEIN 1 442 IPR045185 GO:0061630
Lan3g0013 442 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Lan3g0013 442 CDD RING-Ubox_PUB 10 58 IPR045210 -
Lan3g0013 442 PANTHER OS11G0573500 PROTEIN 1 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0013 Lan-Chr3 160135 161665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0013 2 442 U-box Gene Family AT2G35930 50.112 6.30e-153 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0013 - - lang:109342674 870.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1862 6 29754332 29755648 Lan3g0013 3 160135 161665 LSH
Lan3g0013 3 160135 161665 Lan8g1576 8 22788628 22790291 PCT
Lan8g1576 8 22788628 22790291 Lan3g0013 3 160135 161665 PCT