Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0008 ATGGAAGAGCACTTCTTGCCTCTGTATTCACCTCTTTCTCCATTCGTATGTGATGGAAAGGGATGGAAACTGTGCTTTGAAGACTTTGTTTCAGGCTTAGGAGTGAACATGGTCACTATTGTTATGATTGTCGTGATTGGATTTAATCACAAGATTGGTAGAGGACAACGACTTCAGAGATCACATGCCCAGAGGACCCTTGTGGAGAAATTGTTCCTGGATTTTGCACCAGCCATTGGAGCGTGTCTTTCAGTCTTGGACATAATTTTTCTGTGGAAGAAAGAACCTAATAGTCATTTTGTTGGATATAGTATGTGGTTTTATAGCTGTTCTGAGTTGATCATATGGACAAATATCATTCTCTTCTCAAAATTCTCCATCACTCACTGTGCAGTCTTCAACCATGTATTATGCTATTGGTGGATCCTGAAATCAATATCAGCAGTCTATCATTTAATCACAAAGTTTCCATCACTTGAGGTTTCAATATGCATAATAGAAAGCTTAGTTGTTCTCTTGAATATCACATTTGGCATAGCTATCAATGTGATCAGGACAAAGATACAACCTTCCAAAAGCAGTCCAATGGAAGATCCACTTCTTTCCAATAGTGTGGACCCTGAGGAAGGTGGCCATAGTGACCTTGTAAGTATATGTCATAAATTACATGGAAATAATGAGAACTTTTGGGATTTGATGACATTCAAATTCATAAGTCCAGTAATGAATCAAGGTGTGGTAAAACAAATAGACTCTGAAGATCTGCTGCAGCTACCTACTGACATGGGACCTTCTTCCTGTCATGACTTAATTTCATCCTGCTGGAAAGCTCAGTTGAGTAATAATCTTTCAAACCCATCCTTATTTAGAGCACTTTGTAGTGCATATGGATGGCCATATCTCCGCCTTGGTTTACTGAAGATGATTAATGATTGTATTGGTTTTGCGGGACCATTGCTTCTCAATAAGCTGATCAAGTCTCTTCAACAAGGTTCAGTGAGTGTGGATGGGTACTTACTTGCAATGTCTATGGGTCTCACCTCTATAATTAAATCCTTTTTAGATACACAATATACTTTTCACCTTTCCAAACTGAAGCTAAAGCTGCGATCTAGTATCATGACTCTAATCTATGAGAAGTGTCTATGTGTGAACCTAGCGGAGCGTTCAAAATTCACAAATGGAGAAATTCAGACATTTATGTCAGTAGATGCTGACCGAACTGTCAACTTGTGTAATAGTTTCCATGATCTGTGGAGCTTGCCTTTACAAATAGGAGTGGTGCTTTATCTTCTGTATACTCAAGTCAAATTTGCGTTTGTAGCTGGATTAGCAATAACCATTTTATTGATACCAGTGAATAAATGGATATCAAAATTGATTGCAAGGGCCACAGAGCAAATGATGAAGGAGAAGGATGAAAGGGTTCGTAGGACGGGAGAACTTTTGACTTATATTCGCACTTTGAAGATGTATGGATGGGAACTCCTTTTTTCTAGTTGGTTGATGGAGACAAGATCATTGGAAGTGAAACATCTATCTACTCGGAAATACTTGGATGCATGGTGTGTATTCTTTTGGGCTACAACACCAACACTCTTTTCTCTTTGTACATTTGGACTCTTTGCATTGATGGGACATCAGCTTGATGCTGCCATGGTTTTTACTTGTCTTGCTTTGTTTAACACACTGATTTCACCACTGAATTCATTCCCTTGGGTGATTAATGGATTGATTGATGCCATTATATCCTCTAGACGGCTGAGTAGGTTTCTCTCTTGTCCTGAACATAAAGTGGGAGACATCAGTTATTGTTCATCCACGTTCCCGAGTAAGCAGCCCGATTCTGTACAAGATTCGGCTGTCAGTTTCGAAGATGCATGCTGTACTTGGTCAAGCGGTGATGAACAAACATTAAATTTGGTGTTGAATCATGTGACACTAAGCCTCTCCAAGGGTTCCTTTGTTGCAGTTATTGGAGAGGTTGGTTCAGGTAAGTCATCTCTGTTATATTCAGTTCTTGGAGAAATGCGGCTTGCTCATGGATCTGTCTATTCCAATGGATCCATAGCTTATGTACCACAGGTTCCCTGGATTTTATCTGGAACTATTCGTGACAACATATTATTTGGGAAAGGCTATGATCCTGAAAGATATGCAGATACGTTGCAAGCATGTGCGTTAGATGTTGATATCTCATTGATGGTTGGAGGTGACATGGCTTATATTGGCGAAAAAGGAGTGAACTTATCGGGTGGACAGAGAGCTCGTCTTGCTTTGGCAAGGGCAATGTATCATGGCTCAGATGTTATTATGCTTGACGATGTCCTGAGTGCAGTAGATGTACAAGTTGCTCAATGGATTTTACGCAATGCCATTTTAGGTCCTCTTATGCGGGGGAAAACACGATTGCTATGTACCCACAACACTCAGACAATATCTTCTGCTGATATGGTTGTTGTAATGGATAAAGGACATGTAAAGTGGATGGGAGGTTCAGCTGAATTTCCGTTTTCTTCATATACAGCATTATCCCCAATGAATGAAATGGATTCATCTTTACAGAATCACACACAATCTTTAAACACAAATTTGTCTTCCAAATCCAAGGAGCAACCTCTTCCTGATAAAGTTATTATGCATGCTCTGGATGGGCCAGAGGAAGTAATTGAAGTTGAGTCAAGGAAAGAGGGTAAAGTTGAACTTGGAGTGTATAAGAACTATGCTGTCTTCACTGGCTGGTTCACCACAGTTATTATATGCCTGTCAGCTATTTTGATGCAAGCTATTCGTAATGGAAATGATTTATGGCTGTCATATTGGGTTGATTCGACAACAGAAAGCAGACAAACAAAATACTCTCTGTCCTTCTATCTGGGTATACTTTGTTTGTTATGTATTATGAATTCCTTTTTCACAATGGTGAGGGCGTTCTCTTTTGCATTTGGGGGCATACAAGCAGCAACTAAGGTACACAATAGACTTCTCAGAAAGCTTATCAATGCACCTGTCCAATTCTTTGATCAGACCCCAGGTGGAAGAATACTGAACAGGTTGTCTTCAGATCTTTACACAATTGATGATTCTCTTCCGTTCATGTTGAACATTCTCCTAGCTAATTTTGTAGGGCTGTTGGGTATTGCAATTATTTTGTCATATGTACAGGTCCTCTTCTTAGTCCTGCTATTACCATTTTGGTATATCTACAGTAAACTCCAGTTTTTCTACAGGTCAACATCAAGAGAATTACGACGACTGGATAGTGTTTCTCGTTCTCCAATATATACATCTTTCACTGAAACACTTGATGGATCATCAACTATTAGGGCATTTAAATCTGAGGACTTTTTCTTTGCCAAATTCACTGAACACATAACATTGTATCAGAAGACTTCCTACACAGAGACGGTGACAAGTTTATGGCTTTCCTTGCGTCTTCAGTTATTAGCTGCATTTATCGTCTCATTCATAGCTCTGATGGCTGTTGTTGGATCTCATGGCAGTTTGCCTATCAACTTCGGTACCCCTGGGCTGGTTGGATTGGCCCTCTCTTACGCAGCACCTATTGTATCCTTGTTGGGGAGTTTTTTAACAAGTTTCACTGAAACAGAAAAGGAAATGGTTTCAGTTGAAAGAGCCCTTCAGTACATGGACATTCCTCAAGAAGAACAAGCTGGATGCCTAAAGTTGAATCCATATTGGCCAAATGAAGGAGTTATTGAATTCTACAATGTTACTTTGAAATATATGCCATCTTTGCCAGCATCACTTAGCAATCTTAGTTTTACAATTGCACGAGGAATGCAGGTTGGAATAATTGGAAGAACAGGTGCTGGAAAGTCTAGTGTGTTAAATGCCCTTTTCCGCCTTACCCCAGTATGTACAGGCTCCATCACAATTGATGGCATGGACATTAAAAATATTCCTGTCAGAGACCTACGTGCGCATTTGGCTATTGTTCCTCAGAGTCCTTTCCTTTTTGAAGGATCATTAAGGGATAATCTGGACCCATTCAAAATGAATGATGACTCAAAAATTTGGAATGCATTGGAGAAGTGCCATGTGAAAGAGGAAGTAGAAATGGCTGGAGGGCTGGACATTCTCATAAAGGAAGCCGGGATGTCATTTTCTGTTGGCCAGCGGCAACTCCTTTGCCTTGCACGTGCTCTTCTCAAATGTTCAAAGGTCCTCTGTTTGGATGAATGCACTGCCAATGTAGACATTCTAACTGCTTCACTGCTGCAAAGTACTATATCCAGTGAATGCAAAGGCATGACAGTGATCACAATTGCTCACAGGATTTCAACTGTTCTAAATATGGATAATGTTCTTATTCTTGACCACGGGAGCCTGGTTGAACAAGGAAATCCACAAGTTCTTCTGAAGGATAACTCCTCTATATTTTCCAGTTTTGTTAAAGCTTCATCCATGTAA 4434 0.3996 MEEHFLPLYSPLSPFVCDGKGWKLCFEDFVSGLGVNMVTIVMIVVIGFNHKIGRGQRLQRSHAQRTLVEKLFLDFAPAIGACLSVLDIIFLWKKEPNSHFVGYSMWFYSCSELIIWTNIILFSKFSITHCAVFNHVLCYWWILKSISAVYHLITKFPSLEVSICIIESLVVLLNITFGIAINVIRTKIQPSKSSPMEDPLLSNSVDPEEGGHSDLVSICHKLHGNNENFWDLMTFKFISPVMNQGVVKQIDSEDLLQLPTDMGPSSCHDLISSCWKAQLSNNLSNPSLFRALCSAYGWPYLRLGLLKMINDCIGFAGPLLLNKLIKSLQQGSVSVDGYLLAMSMGLTSIIKSFLDTQYTFHLSKLKLKLRSSIMTLIYEKCLCVNLAERSKFTNGEIQTFMSVDADRTVNLCNSFHDLWSLPLQIGVVLYLLYTQVKFAFVAGLAITILLIPVNKWISKLIARATEQMMKEKDERVRRTGELLTYIRTLKMYGWELLFSSWLMETRSLEVKHLSTRKYLDAWCVFFWATTPTLFSLCTFGLFALMGHQLDAAMVFTCLALFNTLISPLNSFPWVINGLIDAIISSRRLSRFLSCPEHKVGDISYCSSTFPSKQPDSVQDSAVSFEDACCTWSSGDEQTLNLVLNHVTLSLSKGSFVAVIGEVGSGKSSLLYSVLGEMRLAHGSVYSNGSIAYVPQVPWILSGTIRDNILFGKGYDPERYADTLQACALDVDISLMVGGDMAYIGEKGVNLSGGQRARLALARAMYHGSDVIMLDDVLSAVDVQVAQWILRNAILGPLMRGKTRLLCTHNTQTISSADMVVVMDKGHVKWMGGSAEFPFSSYTALSPMNEMDSSLQNHTQSLNTNLSSKSKEQPLPDKVIMHALDGPEEVIEVESRKEGKVELGVYKNYAVFTGWFTTVIICLSAILMQAIRNGNDLWLSYWVDSTTESRQTKYSLSFYLGILCLLCIMNSFFTMVRAFSFAFGGIQAATKVHNRLLRKLINAPVQFFDQTPGGRILNRLSSDLYTIDDSLPFMLNILLANFVGLLGIAIILSYVQVLFLVLLLPFWYIYSKLQFFYRSTSRELRRLDSVSRSPIYTSFTETLDGSSTIRAFKSEDFFFAKFTEHITLYQKTSYTETVTSLWLSLRLQLLAAFIVSFIALMAVVGSHGSLPINFGTPGLVGLALSYAAPIVSLLGSFLTSFTETEKEMVSVERALQYMDIPQEEQAGCLKLNPYWPNEGVIEFYNVTLKYMPSLPASLSNLSFTIARGMQVGIIGRTGAGKSSVLNALFRLTPVCTGSITIDGMDIKNIPVRDLRAHLAIVPQSPFLFEGSLRDNLDPFKMNDDSKIWNALEKCHVKEEVEMAGGLDILIKEAGMSFSVGQRQLLCLARALLKCSKVLCLDECTANVDILTASLLQSTISSECKGMTVITIAHRISTVLNMDNVLILDHGSLVEQGNPQVLLKDNSSIFSSFVKASSM* 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0008 1477 Pfam ABC transporter transmembrane region 918 1167 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g0008 1477 Pfam ABC transporter transmembrane region 304 568 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g0008 1477 ProSitePatterns ABC transporters family signature. 750 764 IPR017871 GO:0005524
Lan3g0008 1477 Gene3D ABC transporter type 1, transmembrane domain 276 598 IPR036640 GO:0005524|GO:0016021
Lan3g0008 1477 Gene3D ABC transporter type 1, transmembrane domain 886 1224 IPR036640 GO:0005524|GO:0016021
Lan3g0008 1477 ProSitePatterns ABC transporters family signature. 1376 1390 IPR017871 GO:0005524
Lan3g0008 1477 SUPERFAMILY ABC transporter transmembrane region 914 1222 IPR036640 GO:0005524|GO:0016021
Lan3g0008 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1232 1465 IPR027417 -
Lan3g0008 1477 Gene3D - 603 869 IPR027417 -
Lan3g0008 1477 CDD ABC_6TM_MRP7_D1_like 303 588 - -
Lan3g0008 1477 SMART AAA_5 652 826 IPR003593 -
Lan3g0008 1477 SMART AAA_5 1266 1450 IPR003593 -
Lan3g0008 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1240 1473 IPR003439 GO:0005524
Lan3g0008 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 918 1205 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g0008 1477 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 622 849 IPR003439 GO:0005524
Lan3g0008 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 618 836 IPR027417 -
Lan3g0008 1477 PANTHER MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 7 251 1458 - -
Lan3g0008 1477 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 251 1458 - -
Lan3g0008 1477 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 305 580 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Lan3g0008 1477 SUPERFAMILY ABC transporter transmembrane region 291 596 IPR036640 GO:0005524|GO:0016021
Lan3g0008 1477 Pfam ABC transporter 643 775 IPR003439 GO:0005524
Lan3g0008 1477 Pfam ABC transporter 1257 1404 IPR003439 GO:0005524
Lan3g0008 1477 CDD ABCC_MRP_domain1 622 825 - -
Lan3g0008 1477 CDD ABC_6TM_MRP7_D2_like 917 1217 - -
Lan3g0008 1477 CDD ABCC_MRP_domain2 1238 1457 - -
Lan3g0008 1477 Gene3D - 1225 1475 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0008 Lan-Chr3 125036 140410 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0008 642 871 Calmodulin-binding Proteins AT2G36910 28.571 1.50e-19 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0008 K05674 - gmx:100814181 2388.61