Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0001 ATGGGTAACTCACATGGCCATCGTCACAAACACCGTAACTCCCTTCATCCTCCTCCGACATATAAATATGATTCTCAACCTCAACAGTTACCATTACCGATCCCAATTCCCCAAGGTACCTCCAATTCCAACAACAACAACATGATATCTTTGCCTTATACTCACCTCGACTCCACCACTCTCAGAGCCCTCGCCGGAAACGCTGAGGGCTTTGGTCGCTTCGCTATGGGTGGCTTTCACGGTCCCCTTTATCATGTCACTTCTCTATCAGATGATGGACCGGGATCACTACGTGACGCTTGTCGCAAAAAAGAACCTTTGTGGATTGTGTTTGAGATATCAGGCACTATTCTTCTCTCGTCATACTTGAGTGTATCATCATACAAGACGATAGATGGTCGGGGCCAAAGGATTAAGCTCACGGGAAAGGGTTTGCGGCTGAAGGAATGTGAACATGTGATAGTTTGCAATTTAGAGTTTGAAGGAGGCAGAGGGCCTGATGTTGATGGCATTCAGATCAAGCCTAACTCAAAGCACATATGGATAGATCGTTGCAGTCTCCGGGATTTTGATGATGGGCTGATCGATATCACACGAGAAAGCACAGATATTACTATTTCAAGGTGTCACTTTTCTCAACATGACAAAACAATACTCATTGGAGCAGATCCCTCACATGTTGGTGATAGATGCATGAGAGTCACTATTCATCACTGTTTTTTTAATGAGACTCGACAAAGGCATCCTCGTGTTAGATATGCGAAAGTACATCTGTACAATAATTACACCAGAGGCTGGGGCATATATGCTGTCTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGACAGAAGAAGGTGGCATTTAAGTATCTTACTGAAAAGGCAGCGGACAAGGAATCGGGAGCAACTGGGCAGATAAGGTCAGAAGGAGACTTATTTTTAAATGGAGCTCAACCAGGGCTAATGAATGAGGATGTTGGATGTAACATGTTTCATCCCAGTGAATATTATCCCACATGGACGGTGAAACCTCCTACAGATGATCTAAAACAACTTCTACATCACTGCACTGGATGGCAATCTGTTGCGAGGCCACCGGATCAAACAGCTTGTGCCGAATAG 1143 0.4453 MGNSHGHRHKHRNSLHPPPTYKYDSQPQQLPLPIPIPQGTSNSNNNNMISLPYTHLDSTTLRALAGNAEGFGRFAMGGFHGPLYHVTSLSDDGPGSLRDACRKKEPLWIVFEISGTILLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIVCNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRESTDITISRCHFSQHDKTILIGADPSHVGDRCMRVTIHHCFFNETRQRHPRVRYAKVHLYNNYTRGWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKESGATGQIRSEGDLFLNGAQPGLMNEDVGCNMFHPSEYYPTWTVKPPTDDLKQLLHHCTGWQSVARPPDQTACAE* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0001 380 PANTHER PECTATE LYASE 45 372 - -
Lan3g0001 380 MobiDBLite consensus disorder prediction 1 47 - -
Lan3g0001 380 Gene3D - 54 356 IPR012334 -
Lan3g0001 380 MobiDBLite consensus disorder prediction 1 16 - -
Lan3g0001 380 SMART amb_all 79 292 IPR002022 -
Lan3g0001 380 SUPERFAMILY Pectin lyase-like 65 371 IPR011050 -
Lan3g0001 380 PANTHER PECTATE LYASE 18-RELATED 45 372 IPR045032 GO:0030570
Lan3g0001 380 Pfam Pectate lyase 123 285 IPR002022 -
Lan3g0001 380 PRINTS Pollen allergen Amb family signature 67 84 IPR018082 -
Lan3g0001 380 PRINTS Pollen allergen Amb family signature 122 138 IPR018082 -
Lan3g0001 380 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0001 Lan-Chr3 49325 63676 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0001 89 374 Polysaccharide Lyase AT3G55140 76.224 3.76e-169 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0001 K01728 - gmx:100814368 634.409