Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1428 ATGGGAATTTGCTGGACTTGTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCACCTCACAACCCAACATCAGCCACCACCACCACCACCACCGGTGCCCTCAGTGCAGGGACATCATCTACATATACATATACATCTTCAACAACTACAACTACAACTACAACTACCTCTTCCTCTGGAAGTGGAAATAATAGTTCTTCCATAAATAACAAGTTGTCATCTGTGTCTAGTGGTAATAATAATAATAATGAATCTTATAATCCTAAAGGCCAGATCTTACCTACCGATACTTTGAGGATCTTCACCTTTGTTGAGTTGAAAGCTGCAACTAGGAATTTCAGACCCGATACTGTACTCGGTGAGGGTGGTTTTGGAAAAGTCTATAAAGGCTGGCTTGATGAAAAGGCCAACTCCAAGAATGGAACCATCATTGCAGTCAAGAAATTGAACTCTGAAAGCGTACAAGGAATTGAGGAGTGGCAGTCAGAAGTAACATTTCTTGGTCGTCTTTCTCATCCTAACCTTGTTAAGCTGTTGGGATATTGTTTGGAGGAAACTGAGCTTCTTCTTGTCTATGAATTCATGCAAAAGGGCAGTTTGGAAAATCATCTGTTTGGAAGGGGCTCTTCTGTTCAACCACTTCTTTGGGACATCAGGCTTAAGATTGCAATTGGAGCAGCTCGTGGCCTCGCTTTCTTGCATACATCTGAGAAAGTCATTTACAGGGACTTCAAGGCCTCCAACATATTACTTGATGGGTCATATAATGCAAAGATATCTGACTTTGGATTGGCAAAACTGGGTCCTTCAGCTAGTCAATCCCATGTGACAACAAGAGTAATGGGCACATATGGCTATGCTGCTCCTGAATATGTGGCCACAGGGCATCTATATGTAAAGAGTGATGTATATGGGTTTGGAGTAGTTTTGGTTGAGATGCTAACAGCACAACGAGCGCTTGATCCAACCCGTCCAAGTGCACAGCTTAATCTAACAGACTGGGTGAAACCATACCTGCACGATAGAAGAAAATTGAAGAGCATTATGGATTCAAGATTGGAAGGAAAATATCCATCAAAAGCTGCATTTCGGATAGCCCAACTTGCATTAAAATGCCTTGCACCTGAGCACAAACAGAGGCCATCAATGAATGAAGTTTTGGAGAGCTTGGAGAGAATTGAAGCTGCCAATAAGGACCCGAAACTCCAGTCTAATCGTACAGTTGCTACCCGTCATGTGCACCACCGTTCCCCGCTTCATCCAAACCAGGAAGGACGCTAG 1278 0.4288 MGICWTCFSSSSSSSSSPHNPTSATTTTTTGALSAGTSSTYTYTSSTTTTTTTTTSSSGSGNNSSSINNKLSSVSSGNNNNNESYNPKGQILPTDTLRIFTFVELKAATRNFRPDTVLGEGGFGKVYKGWLDEKANSKNGTIIAVKKLNSESVQGIEEWQSEVTFLGRLSHPNLVKLLGYCLEETELLLVYEFMQKGSLENHLFGRGSSVQPLLWDIRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGSYNAKISDFGLAKLGPSASQSHVTTRVMGTYGYAAPEYVATGHLYVKSDVYGFGVVLVEMLTAQRALDPTRPSAQLNLTDWVKPYLHDRRKLKSIMDSRLEGKYPSKAAFRIAQLALKCLAPEHKQRPSMNEVLESLERIEAANKDPKLQSNRTVATRHVHHRSPLHPNQEGR* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1428 425 Gene3D Phosphorylase Kinase; domain 1 96 193 - -
Lan2g1428 425 CDD STKc_IRAK 118 392 - -
Lan2g1428 425 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 44 406 - -
Lan2g1428 425 MobiDBLite consensus disorder prediction 393 425 - -
Lan2g1428 425 MobiDBLite consensus disorder prediction 9 89 - -
Lan2g1428 425 PANTHER OS01G0588500 PROTEIN-RELATED 44 406 - -
Lan2g1428 425 ProSiteProfiles Protein kinase domain profile. 112 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1428 425 Gene3D Transferase(Phosphotransferase) domain 1 194 415 - -
Lan2g1428 425 SUPERFAMILY Protein kinase-like (PK-like) 86 389 IPR011009 -
Lan2g1428 425 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672|GO:0006468
Lan2g1428 425 Pfam Protein tyrosine and serine/threonine kinase 116 389 IPR001245 GO:0004672|GO:0006468
Lan2g1428 425 ProSitePatterns Protein kinases ATP-binding region signature. 118 147 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1428 Lan-Chr2 24666480 24668683 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1428 98 410 Receptor kinase-like Gene Family AT4G02010 50.313 2.37e-102 318
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan2g1428 PK_Tyr_Ser-Thr 1.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1428 - - vun:114194495 568.155