Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1426 ATGGAATATGATGCCCTAGTTAACAATAATAGTGGTTTGTTTGGGAGCTTGTCATCATCAGTAGACACAGATGAAGCAATAGATTTGACAGATGAGTTGTTGGTAGAAGGGTGCTGGGTGGAAACAACAACAGGTGGAGGAGACCATATTCATCAGCTGCATCAAGATATTGAATTACTTAATGGAGGATCATTGGTGGGTAAGAGATGGTGGATTGAGCCATCAACAACAACATCATCATTATCATCATCAGTTAAAGAAAGATTAGTGGTTGCTGTTGGATACTTGAAAGAGTACACTAAGAACACCAACATCCTCATTCAGATATGGGTCCCCCAACGCAGCAACAGCAGATTACCACCCTTTGAGTTTAATCATGATCACTTGGTGACTCCAACAAATGTTAAGTTCTTTAGAAACCAGCAAGTTCATCATCAATTGCAGCAGTACGATGTACGTGGATGTTTGACCCTTCCTGTCTTCCAACGTGGCACTGCTACTTGTCTTGGTGTCCTTCAGATTACTACTACTACTAACCATAACTCATCACCCTTCACCACTTATCATCGCCCTCAACAACTTATTCACAACAATCTCTCCCTTCCTCTCGACCATGCTGTTGTTGATTTTAGGAGTTGTCAGAACTTGATTCCAACTTCTTCTGTGAAGGTATATGATGATGAGTTATACCAAGCAGCACTAAATGAGATTGTAGAAGTGTTGACATCAGTGTGCAAGACACACAATTTGCCTTTAGCACTGACATGGGCACCTTGCATCCAGCAAGGTAAGTATGGTTGTGGTCATTCAGCAACTGATCAGAATTATGTGTATTGTGTATCCACCGTAGATTCAGCATGTTTTGTGGTAGATCTAGACATCCTTGGATTCCAAGAAGCGTGCTCACAGTATCACCTATACAGAGGCCAAGGAATAGTTGGAACAGCTTTCACTACAGCCAAACCTTGTTTTGCTATTGACATCACTGCCTTTAGCAAAGCTGAGTATCCTCTTTCTCACCATGCAAACATGTTTGGCTTGCATGCTGCTTTTGCCATTCCACTCAGGAGTCTCTACACTGCTTCTGCTGATTTTGTTTTGGAGTTTTTCCTCCCAAAGGATTGTCATGACCCTGAAGAGCAAAGACACATGTTAAATTCATTGTCCATGCTGGTACAGCAAGGTTGCCGAAGCTTGCATGTTGTAACTGAGGATGAATTCACCTTGCCACTACCGTCACCACCACCACCACCACCACCACCTCACAACAAAGAAGAAGCTCATATGATTGAGAAATTATTATTTGCATCTACTCTGTCGTCATCACAAGTAGAATCATCATCATGGATTGCACATATGATGGAAGCACAACAGAAGGGGAAAGGTGTGTCAGTGTCATTGGAGTATGAGCTTGAAGAGCCAAAAGAGGAGTTCAAAGTGACAACAAACTGGGATGGAAGTAATGAACTGATCCAGGCACAGACAACACAAGTGTTTTCAGAATTTACTGAGCAAAGTTCAGGGTCAAGATCAAGAGCAAGTACTGTAGAGGTTGGTACTGGAGGTGGAGAAGAATGTTATTCATTTAGTGGAAGGCATTCATCAACAACAACAACAACAACAACTAATTCAGGTGGTGGTGGGAGAAAGACAGGAGATAAGAGGAGAACAAAGGCAGAGAAGACTATAAGTTTGCCAGTTCTCAGACAATACTTTGCTGGAAGCCTAAAAGATGCTGCCAAGAGCATTGGAGTATGTCCTACAACTCTAAAAAGGATATGCAGACAGCATGGCATAACAAGGTGGCCATCAAGGAAAATAAAGAAGGTAGGGCACTCTTTAAAGAAACTTCAACTGGTGATTGATTCAGTGCAGGGTGCTGAGGGTGCCATTCAGATTGGCTCCTTCTATACCAGTTTTCCAGAGTTGTGTTCTGACTCATCCAACAAAATGCATACTGAGTATGACAACAATAACAACAACAACAACAACAATGGATTTTATAATGGAGATGTTTGCAGTCAGAATTTTGCAGCTTCATCTATGATCAACAACACTAATAACAATGGAGGAGTTGATGTTCTAATGATGACAGAAAGCTCCCCTGATCATCATCATGATCATGCATTTGTGAACAGAGAGTTGTCAATCCAAGAGGATACAAAATTATACTTCACAAGATCCAAGGCTGCTCCTAGTGGGTGGAGGGGTGCACTTAGAGTGAAAGCTACTTTTTTAGATGAAAAAATCAGATTTAGTTTGCAACCAAAATGGGGGTTCAGAGAATTGCAGGTTGAGATAAGAAAACGTTTGAACCTAAATGATGTGAGGAACATTGATCTGAAGTATTTGGATGATGAAGGGGAGTGGGTTGTATTAGCATGTGATGGTGATCTTGAGGAGTGTAAAGACTTGCATAGGTCATCACAAGGACGCACAATTAGACTCTCACTCTTTCAAGCTTCTCCTGTTCATAATAATAATAATAATCTTTCAAACACATTTAGTGGTGGCAGAAGCACCACTCCATCTTCATCATCCTAG 2544 0.4135 MEYDALVNNNSGLFGSLSSSVDTDEAIDLTDELLVEGCWVETTTGGGDHIHQLHQDIELLNGGSLVGKRWWIEPSTTTSSLSSSVKERLVVAVGYLKEYTKNTNILIQIWVPQRSNSRLPPFEFNHDHLVTPTNVKFFRNQQVHHQLQQYDVRGCLTLPVFQRGTATCLGVLQITTTTNHNSSPFTTYHRPQQLIHNNLSLPLDHAVVDFRSCQNLIPTSSVKVYDDELYQAALNEIVEVLTSVCKTHNLPLALTWAPCIQQGKYGCGHSATDQNYVYCVSTVDSACFVVDLDILGFQEACSQYHLYRGQGIVGTAFTTAKPCFAIDITAFSKAEYPLSHHANMFGLHAAFAIPLRSLYTASADFVLEFFLPKDCHDPEEQRHMLNSLSMLVQQGCRSLHVVTEDEFTLPLPSPPPPPPPPHNKEEAHMIEKLLFASTLSSSQVESSSWIAHMMEAQQKGKGVSVSLEYELEEPKEEFKVTTNWDGSNELIQAQTTQVFSEFTEQSSGSRSRASTVEVGTGGGEECYSFSGRHSSTTTTTTTNSGGGGRKTGDKRRTKAEKTISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYTSFPELCSDSSNKMHTEYDNNNNNNNNNGFYNGDVCSQNFAASSMINNTNNNGGVDVLMMTESSPDHHHDHAFVNRELSIQEDTKLYFTRSKAAPSGWRGALRVKATFLDEKIRFSLQPKWGFRELQVEIRKRLNLNDVRNIDLKYLDDEGEWVVLACDGDLEECKDLHRSSQGRTIRLSLFQASPVHNNNNNLSNTFSGGRSTTPSSSS* 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1426 847 MobiDBLite consensus disorder prediction 526 559 - -
Lan2g1426 847 Gene3D - 736 823 - -
Lan2g1426 847 SUPERFAMILY CAD & PB1 domains 730 824 - -
Lan2g1426 847 ProSiteProfiles PB1 domain profile. 738 821 IPR000270 GO:0005515
Lan2g1426 847 MobiDBLite consensus disorder prediction 825 847 - -
Lan2g1426 847 ProSiteProfiles RWP-RK domain profile. 549 630 IPR003035 -
Lan2g1426 847 PANTHER PROTEIN NLP8 53 116 IPR045012 GO:0003700
Lan2g1426 847 PANTHER PROTEIN NLP8 132 826 IPR045012 GO:0003700
Lan2g1426 847 CDD PB1_NLP 739 820 IPR034891 -
Lan2g1426 847 MobiDBLite consensus disorder prediction 529 548 - -
Lan2g1426 847 Pfam RWP-RK domain 563 610 IPR003035 -
Lan2g1426 847 SMART PB1_new 738 821 IPR000270 GO:0005515
Lan2g1426 847 Pfam PB1 domain 739 820 IPR000270 GO:0005515
Lan2g1426 847 PANTHER PROTEIN NLP2 132 826 - -
Lan2g1426 847 PANTHER PROTEIN NLP2 53 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1426 Lan-Chr2 24644263 24647378 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1426 16 824 NLP Transcription Factor Family AT2G17150 39.871 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan2g1426 PB1 2e-14 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1426 - - lja:Lj0g3v0358659.1 860.522
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1426 2 24644263 24647378 Lan11g0008 11 52174 55143 LSH