Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1420 ATGGAAAACAAAGCTGAGCTTCAAATTCAAAGTGATTCTGTGTCTGATCCTGTTCCTCCTCAGCCTCAGCCGTGTATTGGGAATGAAAAAGGTGACAACACCACCTTGATTCCTCAGTCAAGAAGACCTGCACTATCCTCTCTGCAAATACCACCATGGTCACTAGATACCGCATTATCTTCTTTTGCAAACACCGATGGTCCTACACTCTCAACTCCTGCTTCTACAAGGGGACTTCCTCCAAGGCCAAGTTCAGCCAAATTCAGGACTTCCATCAAAACCTCACTTCCTCAGAGGATCTTCAGGGCTAAAACTTGCACCGGGGTCGGGGATACTGAAAGAACACTTCTTATCCTTCCTGATACCTCCCCATCCCATGCTCCTTTGGATAAGCCTTCAACTTCAAGGTCCCTGTCTCTTAATAATAAGGTTTTCTTCTCTTCCTCAACAAAAGCTGCACACTCAGTACCAGTTACTCCAATTACAACTTCAGCTGCAGAGGATGCACATGGAAGGCAACCAGACTCTGGTTCTGGTTCAAGGATAATGGAAGTTATGCACCATATGACTCGATCATTTTCAGTTCCGGTTAATGGAAAATCTACTAATGTAAGGCGAACAGATTCTAGGTGCTTGATTCGTGTAATTTCAGTTAGAGCACATCTTGAAACTGTTGAGGGAACTTCAAATGACGATGCTTCAGTTTCGGAGATTGGTAATTCTTCAAAGTATACAGAATCCATTGAAGATACCACCGAGGATATACCAGAGGAAGAAGCAGTTTGTAGGATTTGTTGGGTGGAGCTTGGAGAAGGAGGTAATACTCTTAAGATGGAGTGCAGTTGCAAAGGTGATCTTGCACTTGCTCACAAAGACTGTGCAGTGAAGTGGTTTAGTATTAAAGGAAATAGGACCTGTGATGTCTGCAAGCAGGATGTCCAAAACCTTCCAGTTACGCTGTTGAAAATTTATAATCCTCAAAATTCTGCTAGGCAGCCATCATTTGCGCAGCTGTCACAACAGGGAAACACAAATTATTACAGGATCTGGCGGGATATACCTGTACTCATCTTGGTCAGCATGCTTGCTTACTTTTGCTTTCTAGAGCAACTACTGGTAACAGATATGGGACCCCGCGCTCTTGCCATATCATTACCTTTCGCTTGTGTTTTAGGTTTCCTTTCATCCATTGTTGCGTCGGCCACGGTGAACAGGAGTTACATATGGGCTTATGCATGCTTCCAGTTTGCAATTCTGATCCTGTTTGCTCATGTATTTTATACTATTCTTAATGTTAATGCAGTACTCTCCGTTCTACTTTCCTCATTCACTGGATTTGGGATAACTATAAGCGTGAATTCTCTGCTGATGGAATATATTAGATGGAAAGGAAGTAGGGAGATTCAAGCTTCCAATGAAGAGCGCCGTGATAATAATGTATAA 1443 0.429 MENKAELQIQSDSVSDPVPPQPQPCIGNEKGDNTTLIPQSRRPALSSLQIPPWSLDTALSSFANTDGPTLSTPASTRGLPPRPSSAKFRTSIKTSLPQRIFRAKTCTGVGDTERTLLILPDTSPSHAPLDKPSTSRSLSLNNKVFFSSSTKAAHSVPVTPITTSAAEDAHGRQPDSGSGSRIMEVMHHMTRSFSVPVNGKSTNVRRTDSRCLIRVISVRAHLETVEGTSNDDASVSEIGNSSKYTESIEDTTEDIPEEEAVCRICWVELGEGGNTLKMECSCKGDLALAHKDCAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNPQNSARQPSFAQLSQQGNTNYYRIWRDIPVLILVSMLAYFCFLEQLLVTDMGPRALAISLPFACVLGFLSSIVASATVNRSYIWAYACFQFAILILFAHVFYTILNVNAVLSVLLSSFTGFGITISVNSLLMEYIRWKGSREIQASNEERRDNNV* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1420 480 MobiDBLite consensus disorder prediction 27 45 - -
Lan2g1420 480 CDD RING_CH-C4HC3_MARCH 262 310 - -
Lan2g1420 480 Pfam RING-variant domain 262 309 IPR011016 GO:0008270
Lan2g1420 480 SUPERFAMILY RING/U-box 258 313 - -
Lan2g1420 480 MobiDBLite consensus disorder prediction 59 79 - -
Lan2g1420 480 SMART ringv_2 261 310 IPR011016 GO:0008270
Lan2g1420 480 MobiDBLite consensus disorder prediction 59 89 - -
Lan2g1420 480 MobiDBLite consensus disorder prediction 1 16 - -
Lan2g1420 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Lan2g1420 480 MobiDBLite consensus disorder prediction 1 45 - -
Lan2g1420 480 ProSiteProfiles Zinc finger RING-CH-type profile. 254 316 IPR011016 GO:0008270
Lan2g1420 480 PANTHER OS02G0165000 PROTEIN 21 476 - -
Lan2g1420 480 PANTHER OS02G0165000 PROTEIN 21 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1420 Lan-Chr2 24608441 24612845 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1420 256 316 C3H Transcription Factor Family AT2G37950 46.875 9.40e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1420 - - gmx:100798208 597.816