Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1413 ATGGCCCAATCCACTGACTCCAACTCAGTCCTGAACCGTCGTCTCCCATGCGACTCTGACGGCGTTTGCATGGTCTGCAAGACCAAGCCCACCGCCGTCATTGACAGTCTGACCTGCAACACATGTATCACTCCTTGGCACCTTCCCTGTCTCCCTCTACCCGATCGCCCTCCTACCATGTCTGACGCTCACAATTGGTGTTGTCCTGACTGCGCTGTTCCCACCTCCGTCCCTCAGCCTCTCCCTCCGCCTTCCTCCGATGATCCTTCTTCTCTACTCATGGCTTCTATCAGGGCCATTCAGGAGGATGATTCCCTCACTGATGAACAAAAGGCCAAGAAGCGTATGGATATCATGCTCGGTTCCTCTAAGATCGCTCTTTCCAATAATCCATCTTCTTCTACCGTTGCTGGGATTAACGCTGCGCTTGATATCTTTGATGGAAGTTTCAACTGCTCTATTTGTATGCAGCTACCAGAGAGACCTGTCACGACACCTTGTGGTCATAACTTTTGTTTGAAGTGTTTTCAAAAGTGTTTCTCACAAGGCAACCGAAAATGTGCTAATTGTCGCGGTGCAATACCACTCAAGATGGCGACTAATCCTCGCATCAACTCCCAGCTTGCCTTCGCCATCAGAATGGCAAAGATGGCCAGATCTGGCTGCGCTGTTCCCGGGGGTGTTCCTAAGGTCTACCATTTTATCCACAACCAAGACCGTCCTGACACTGCTTTCACCACTGAGAGAGCAAAGAAGACTGGATTGGCAAATGCCTGTAGTGGGAAGATCTTTGTCACTATTCCTCCGGACCACTTTGGACCCATCCCTGCAGAGAATGACCCAACAAGGAACCGCGGTGTTCTTGTCGGAGATACTTGGATGAACAGGATGGATTGTAGACAGTGGGGTGCTCATCTTCCCCATGTTGCTGGTATTGCTGGCCAGAGTGCTTATGGTGCTCAGTCTGTCGCCCTCTCCGGAGGCTATGTTGATGACGAGGACCATGGTGAGTGGTTCCTCTACACTGGCAGTGGAGGAAGAGATCTTAGTGGCAACAAACGCACAAACAAGAACCAGTCATTCGATCAAAAATTTGAAAATATGAATGAGGCTCTCAGAGTAAGTTGTCTAAAGGGCTATCCGGTGCGTGTTGTAAGGTCCTCCAAGGAGAAGCGATCTGCATATGCACCAGATGAAGGAGTAAGATATGATGGTGTCTACAGAATAGAGAAGTGCTGGCGCAAAGTGGGACAACAGGGTTGCAAGGTCTGCCGGTATTTATTTGTGAGATGTGACAATGAGCCTGCGCCATGGACAAGTGATGACTGTGGAGACAAACCACGTCCACTGCCTAAAATTAAGGAACTGAAGGGTGCAGTTGACTTAACCGAAAGGAAGGCAGCTCCATCATGGGATTTTGATGAGGAAAAGGGCTCTTGGTTGTGGAAGAGGCCTCCACCAGAAAGCAAGAAATCAGCAGGCACCGTAAGCCCTGTCGAAGGACAAATAAGAGCGGTTAAACGAAAAGTGAAAGTTGCATCTGTCAAAGAAAAACTCCTGAAAGAGTTTGCTTGCCAAATCTGTCGCAAGGTGATGTGTAACCCTCTTACAACACCCTGCGCTCATAACTTCTGTAAAGCCTGTTTGGAGGGAGCATTTTCAGGCCAAAGTTTCATCAGAAAAAGGGCTGTCCAAAGTGGACGTTCATTACGTGCACAAAAGAACATCATGAAGTGCCCATCCTGCCAAAACGACATAGCTGAGTATTTGCAAAACCCACAGGTTAACAGGCAAATGATGGGTATCATAGAATCACTCCAGTGCGAGGCTGAACAGTTGGAGGAGAATTCTTCAGAGTCAAGTGACAAAAATGATGAAAATCAGAAGAATGGGAGTGAAGTTTCGAAACCTGGTGAGGATGATGATGATGATGATGATGTTGATGATGATGCTGTTGATGATGATTCAAGTGAGAAGGTCCTTGAGGAAATTAAGGACAATGATCTGAACTTGCCACAGAAGCGGAGGAAAGTGGCTAAAGGCGCAGTTGTGGTGAATGAAGAGGAACACATTGATGAAGTTGAACAAGACAGTGTGAAAGCTTGCACTTAA 2112 0.4782 MAQSTDSNSVLNRRLPCDSDGVCMVCKTKPTAVIDSLTCNTCITPWHLPCLPLPDRPPTMSDAHNWCCPDCAVPTSVPQPLPPPSSDDPSSLLMASIRAIQEDDSLTDEQKAKKRMDIMLGSSKIALSNNPSSSTVAGINAALDIFDGSFNCSICMQLPERPVTTPCGHNFCLKCFQKCFSQGNRKCANCRGAIPLKMATNPRINSQLAFAIRMAKMARSGCAVPGGVPKVYHFIHNQDRPDTAFTTERAKKTGLANACSGKIFVTIPPDHFGPIPAENDPTRNRGVLVGDTWMNRMDCRQWGAHLPHVAGIAGQSAYGAQSVALSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKNQSFDQKFENMNEALRVSCLKGYPVRVVRSSKEKRSAYAPDEGVRYDGVYRIEKCWRKVGQQGCKVCRYLFVRCDNEPAPWTSDDCGDKPRPLPKIKELKGAVDLTERKAAPSWDFDEEKGSWLWKRPPPESKKSAGTVSPVEGQIRAVKRKVKVASVKEKLLKEFACQICRKVMCNPLTTPCAHNFCKACLEGAFSGQSFIRKRAVQSGRSLRAQKNIMKCPSCQNDIAEYLQNPQVNRQMMGIIESLQCEAEQLEENSSESSDKNDENQKNGSEVSKPGEDDDDDDDVDDDAVDDDSSEKVLEEIKDNDLNLPQKRRKVAKGAVVVNEEEHIDEVEQDSVKACT* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1413 703 Gene3D - 253 448 IPR036987 -
Lan2g1413 703 ProSiteProfiles Zinc finger RING-type profile. 152 191 IPR001841 -
Lan2g1413 703 ProSiteProfiles Zinc finger RING-type profile. 525 583 IPR001841 -
Lan2g1413 703 SUPERFAMILY RING/U-box 144 200 - -
Lan2g1413 703 MobiDBLite consensus disorder prediction 658 681 - -
Lan2g1413 703 SMART ring_2 525 582 IPR001841 -
Lan2g1413 703 SMART ring_2 152 190 IPR001841 -
Lan2g1413 703 SUPERFAMILY RING/U-box 507 596 - -
Lan2g1413 703 MobiDBLite consensus disorder prediction 611 681 - -
Lan2g1413 703 ProSiteProfiles YDG domain profile. 282 430 IPR003105 -
Lan2g1413 703 SMART PHD_3 22 72 IPR001965 -
Lan2g1413 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 637 IPR013083 -
Lan2g1413 703 MobiDBLite consensus disorder prediction 616 636 - -
Lan2g1413 703 ProSitePatterns Zinc finger PHD-type signature. 23 71 IPR019786 -
Lan2g1413 703 MobiDBLite consensus disorder prediction 637 657 - -
Lan2g1413 703 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 13 692 - -
Lan2g1413 703 SUPERFAMILY PUA domain-like 255 449 IPR015947 -
Lan2g1413 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 73 IPR013083 -
Lan2g1413 703 Pfam Zinc finger, C3HC4 type (RING finger) 151 194 - -
Lan2g1413 703 SUPERFAMILY FYVE/PHD zinc finger 15 78 IPR011011 -
Lan2g1413 703 Pfam RING-type zinc-finger 525 580 IPR027370 -
Lan2g1413 703 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 217 IPR013083 -
Lan2g1413 703 Pfam SAD/SRA domain 285 433 IPR003105 -
Lan2g1413 703 SMART G9a_1 277 434 IPR003105 -
Lan2g1413 703 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 13 692 IPR045134 -
Lan2g1413 703 ProSitePatterns Zinc finger RING-type signature. 540 549 IPR017907 -
Lan2g1413 703 Coils Coil 596 630 - -
Lan2g1413 703 ProSiteProfiles Zinc finger PHD-type profile. 20 74 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1413 Lan-Chr2 24583316 24586935 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1413 10 612 C2H2 Transcription Factor Family AT5G39550 59.868 0.0 717
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1413 K10638 - gmx:100781044 941.028