Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1396 ATGCAATCAGATAGTGGAAAGTTATTCATTGGTGGAATATCCTGGGACACAGATGAAGAGCGACTCCGGGAGTATTTCAGTAATTATGGCGAGGTTGTGCAATCAGTGATCATGAAAGACCGGACAACAGGTAGAGCCCGTGGATTTGGTTTTGTTGTTTTTTCCGACCCAGCTGTTGCAGATATAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCAAAGAAAGCTGTTCCCAGGGATGACCAGAACTTAGTGAGTAGGAACAGTGGCAGCAGCGTCCATGGATCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTTGGAGGTTTAGCATCAACCGTGACAGAGAGTGATTTCAAGAACTACTTCGATCAGTTTGGAACTATAACAGATGTTGTGGTGATGTATGATCACAACACTCAAAGGCCAAGAGGCTTTGGATTTATCACTTATGACTCTGAGGGGGCTGTTGAGAAGGTCTTACTTAAGACGTTCCATGAACTGAATGGGAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAGTTATCGCCAGGGCCAAGCCGCAGCCCGATTGGTGGATATAACTATGGTCTGAGCAGGGTCAGTAGTTTCTTAAATGGATTCCCTCAAGGATATAGTCCAAGTACTGTGGGAGGCTATGGGCTTCGGGTGGATGGCAGATTCAGTCCTGTTGCTAGTAGTCGAAGTGGATTTGCTGCTCCATTTGGATCTGCTTATGGAATGAGTATGAATTTTGAGCCTGGCTTGAGTGCTTCTGGATTTGGAGGAAATGCAAATTTCAGTAGTAACCTTAGTTATGGTCAGGGATTAAATCCTTATTATATTGGCAGCTCCAATAGGTTTGCAAGTCCTGTTGGATATGACAGTGGTAGTGGCGGAAACAATTCTTTCTTCAGCTCAGTGACTCGAAATTTGTGGGGGAATGGTGGCCTTAGTTATGGAACAACTTCTGCAAATTCCAATGCATACATTGGATCAGGTAGTGGGAGTGTTATTGGAGGAAACACATTTGACAATACTGGAGTCAATTGGGGGGGTTCTTCAGTAATTTCTGCGCCGGGGGGAGGGAACACTGTGTCGTCACAGAGTACTGGTGTTAACCTTGGATATGGAGGTGGCAACAACAGTTATGGTTTGGGTACTGGAGGGTATGGAAGAAACATTGCTACCACTATTGCCCAAACATCTTCTTACTCTCCATCAAATGGTGGTGTTGATGAGGCTTTTGCTGATTTTTATAATAATAGTTCTGTTTATGGTGACCCTACTTGGCGATCTTCAAATTCTGAGCGAGAAGGATCTGGTCCCTTCGGTTATGGACTCGGCGGTGCAGCTTCAGACGTTTCTGCCAAAAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGAATTGCTACATAG 1458 0.4486 MQSDSGKLFIGGISWDTDEERLREYFSNYGEVVQSVIMKDRTTGRARGFGFVVFSDPAVADIVIKEKHNIDGRMVEAKKAVPRDDQNLVSRNSGSSVHGSPGPGRTRKIFVGGLASTVTESDFKNYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEGAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPIGGYNYGLSRVSSFLNGFPQGYSPSTVGGYGLRVDGRFSPVASSRSGFAAPFGSAYGMSMNFEPGLSASGFGGNANFSSNLSYGQGLNPYYIGSSNRFASPVGYDSGSGGNNSFFSSVTRNLWGNGGLSYGTTSANSNAYIGSGSGSVIGGNTFDNTGVNWGGSSVISAPGGGNTVSSQSTGVNLGYGGGNNSYGLGTGGYGRNIATTIAQTSSYSPSNGGVDEAFADFYNNSSVYGDPTWRSSNSEREGSGPFGYGLGGAASDVSAKSSPGYVGGYTVNKRQPNRGIAT* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1396 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Lan2g1396 485 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 485 - -
Lan2g1396 485 CDD RRM2_DAZAP1 105 184 IPR034131 GO:0003723
Lan2g1396 485 Gene3D - 104 190 IPR012677 -
Lan2g1396 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 166 IPR000504 GO:0003723
Lan2g1396 485 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Lan2g1396 485 MobiDBLite consensus disorder prediction 432 485 - -
Lan2g1396 485 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lan2g1396 485 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 485 - -
Lan2g1396 485 SUPERFAMILY RNA-binding domain, RBD 104 203 IPR035979 GO:0003676
Lan2g1396 485 MobiDBLite consensus disorder prediction 81 104 - -
Lan2g1396 485 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Lan2g1396 485 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lan2g1396 485 Gene3D - 4 88 IPR012677 -
Lan2g1396 485 MobiDBLite consensus disorder prediction 86 100 - -
Lan2g1396 485 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lan2g1396 485 SMART rrm1_1 108 180 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1396 Lan-Chr2 24512406 24517574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1396 8 186 Eukaryotic Initiation Factors Gene Family AT2G36660 28.191 4.07e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1396 K14411 - gmx:100795907 801.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1396 2 24512406 24517574 Lan9g1522 9 21694030 21697825 LSH