Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1394 ATGGTTTCTTCAGACAAAACTGCAGATCAAAATGTTTCTTCTCATAATTTGCAGCTGATAGTGACTCCTCGTAGCAATATTACGGCGGCAGAAGAGATTCATGATACTCAAATTCATTCATCCGAACCAGACGGAGCTGAAAGTATTCCTTCTATGTTAACTATAATAAACAATGTGAAGAATTCTGGTGCTACTACTGCCTGTGCTTCGCAATCTGATACTCTTTCACACGATTCTCGTCCATTGCAATCTGGTCAGGATATCCCCTCTATAATACGTGAAAAGGTATCGAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACATGTTAAGGGGAACAGATTTATAAGGAGTTATTATAAGTGCACATATCCCAACTGCCAGGCAAAAAAGCAATTGGAGCAGCAGTCAAATACCGGGCAGATTACAGATACCATTTGCATTGGCCATCATAATCATCGTAGAACTCAATTGAACACCGCACAACCACTTGATCATGTTCTACCTGCTGTTGAAGACAAAGTGTCCGTTGAGCATGGACTCGAGCCTCAACATATTAAGCCTTTACGTTCCCTTCCGATTTCAGCACTCTCCCCAACTGACGAGTTGAAAGCCGCACATTTACAATTGACTTGGGCAAAGGATGAGGTTCATAACAATGAGAGTCCTGAGCCAAAGCGGCGGAAGAAAGGCAATAGCAACTCTGATCTCACTGCTGATCCGAGGTCAACTTCTGGATCACGTGTTGTTGTTCAGACTTCAAGTGAGGTTGACTTTGTAAATGATGGGTATCGCTGGCGCAAATACGGGCAGAAACAAGTTAAAGGGAATACAAATCCAAGAAGTTATTATCGATGCTCGAATCCTGGATGCTTAGTCAAAAAGCATGTGGAAAGGGCCTCTCATGACTCAAAAATTGTAATCACTACCTATGAGGGACAGCATGATCATGAAATCCCCCCTGGAAGAGCTGTTTCTTTTAATGCAGCTACAAAAACTCAGACAATGACCATTAACGTCAAGCCAGGAACCCAATCTGGACGTGATGCTGTTTGTGTTGAAACAGGAGAACGCAGCTGCTTGGACTCGGAAAGCAGATTAAGTGAGCAACTAAATGGTGATTCAGTTTCTAAATTGAAGGGTGGTGATATGGTTGAATCTGGCATGATCATCCTTCACAGTGAGGGCAATGAGAGTAAACTACTCAAGCAAGAACAGCAAAATGATAACTCAGGTACCAAAGAAAATTCTGCAGGCAGTGACATCATATGCCATTCAAGTTCTGAAGTTCCATGTAGATCGAATGAACAGCTGAAAGATGAGGTAAAAACTAAATCAGAAAGAAGTAAGGATTGCATTAGAGTGGTTGGGGGTAATAATGATACTCAGGGTCAAGAAAGTGAATTCAGTAAGCAATCAACATGTGATGCAGAATCTTCCCAAAGCTAA 1452 0.4187 MVSSDKTADQNVSSHNLQLIVTPRSNITAAEEIHDTQIHSSEPDGAESIPSMLTIINNVKNSGATTACASQSDTLSHDSRPLQSGQDIPSIIREKVSKDGYNWRKYGQKHVKGNRFIRSYYKCTYPNCQAKKQLEQQSNTGQITDTICIGHHNHRRTQLNTAQPLDHVLPAVEDKVSVEHGLEPQHIKPLRSLPISALSPTDELKAAHLQLTWAKDEVHNNESPEPKRRKKGNSNSDLTADPRSTSGSRVVVQTSSEVDFVNDGYRWRKYGQKQVKGNTNPRSYYRCSNPGCLVKKHVERASHDSKIVITTYEGQHDHEIPPGRAVSFNAATKTQTMTINVKPGTQSGRDAVCVETGERSCLDSESRLSEQLNGDSVSKLKGGDMVESGMIILHSEGNESKLLKQEQQNDNSGTKENSAGSDIICHSSSEVPCRSNEQLKDEVKTKSERSKDCIRVVGGNNDTQGQESEFSKQSTCDAESSQS* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1394 483 MobiDBLite consensus disorder prediction 403 422 - -
Lan2g1394 483 SMART WRKY_cls 261 320 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 SMART WRKY_cls 97 156 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 SUPERFAMILY WRKY DNA-binding domain 253 321 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 3 422 IPR044810 GO:0003700
Lan2g1394 483 PANTHER WRKY TRANSCRIPTION FACTOR 1 3 422 - -
Lan2g1394 483 MobiDBLite consensus disorder prediction 457 483 - -
Lan2g1394 483 MobiDBLite consensus disorder prediction 215 251 - -
Lan2g1394 483 Gene3D WRKY domain 248 314 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 ProSiteProfiles WRKY domain profile. 92 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 MobiDBLite consensus disorder prediction 218 236 - -
Lan2g1394 483 MobiDBLite consensus disorder prediction 435 455 - -
Lan2g1394 483 MobiDBLite consensus disorder prediction 431 483 - -
Lan2g1394 483 Pfam WRKY DNA -binding domain 262 319 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 Pfam WRKY DNA -binding domain 98 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 Gene3D WRKY domain 88 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 ProSiteProfiles WRKY domain profile. 256 321 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lan2g1394 483 MobiDBLite consensus disorder prediction 237 251 - -
Lan2g1394 483 SUPERFAMILY WRKY DNA-binding domain 92 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1394 Lan-Chr2 24504724 24507215 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1394 260 338 WRKY Transcription Factor Family AT2G04880 48.101 1.48e-17 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lan2g1394 WRKY 4.6e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1394 K18834 - gmx:100781219 565.844