Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1392 ATGTCACTGAATCGAAGATTTTATGCTTCAAATGGAAGATTGCAACAACAAAGTATGAAGTCTTTGAAGGCAAATGAGCCTTTGCATGGGTCAAATTCTGGTAGGACATGTAGAAGGAAGCCCTTGCTTCTCTTGATTTTTGGTCTTGCGGCTATAGGAGGTGTTTGGTTTTTGTTGAGTTTCAATAGTAAGTGTTTGATGGGCAAGGAAAATGAAGCAGGTTGTGAAGAGAGAGATAGGATCTTGCTAGATCATTATAATGTCAGCAAGAAGCAGCTTCATGCTTTGGCTTCTTTATTCTCTGGATCTGATAAGATTTCGTCCCACTGTATTGATGAAAGAAGACTACAAATGCTGTTAAGCAGTGGCATACTCAGCACTTCATCACAGTTAATTTGTCCAGAGAATCCGGAGTTACAAAAGGAGCATAGCTGTGTTGCAGACACTGTAGAACCCATAGAACAATGCCCAATTCCTGATGATTGTGCCCCGACAAGGCTTGAATTATCATTCCTATTGAAAAAACATGTAGCGTTGGCCTCAAACTCTGCACCTTCATTCAATTTGGTTAATTATTTGCTTTCTGGATTGAACATTGTGCAGTCATGCAAACTGCGAGTCTGTGAAATTAAGGATCTTTTGACCTCATCAAAGTTGGTTAAAGGGTGCTGGTGGGTCCTGATAGGAATTATAATGTCCTTCAAGTTGTCTGGCTTCTGTTTATTATGGAGGCTGGGACAATCGGTTGTTCAGAAAAAGAAGCTGCAACATTTTGTTCGTGTTCCTTCAAAGAGTGCTGGGAGGTGGAGGAAAAAGTTTTTAGTTATATTTGTATCACTTGGAATAGTTGGGTCCATTTGGTTATTCTGGCACTTAAATATGAACATTATGCAGAGAAGAGAACAATTGCTTGCTAACATGTGTGATGAGCGAGCTCGTATGCTGCAAGATCAGTTCAATGTGAGCATGAACCACGTTCATGCCCTGGCTATTCTTGTATCTACCTTTCACCATGATAAACATCCTTCTGCAATCAACCAGAAAATATTTGGAGAATATACAGAGAGTACAGCATTTGAAAGACCACTCACTAGTGGCGTTGCTTATGCTATGAAAGTTCTCCACTCTGATAGGATGCATTTTGAGAATCAACACGGGTGGACAATTAAAAAAATGGAAACTGAGAATGAAGCTCTAGTCCAAGATTGTATTCCAGAAAATTTGGATCCGGCACCCGTGCAAGATGAATATGCACCAGTCATATTTGCTCAAGAAACAGTTTCCCATATTGTATCTATTGACATGATGTCAGGGAAGGAGGATCGGGAGAATATTTTGCGGGCAAGAGCATCAGGAAAGGGGGTTCTGACATCTCCGTTTAAACTACTAAAGTCCAATCACCTAGGTGTCGTACTTACATTTGCTGTCTATAACACAAATCTTCCTCTATATGCTACAGTGGAGCAGCGTATTGAAGCTACTGTGGGGTACCTTGGTGCATCTTATGATGTTCCATCACTAGTGGAGAAGCTTCTGCATCAACTTGCCAGCAAGCAAACCATTGTTGTCAATGTTTATGATACAACCAATGTATCTGCACCTATCACAATGTACGGTACTGATGTTGTTGATACTGGCCTACTACATATAAGCAGTCTAGATTTCGGGGATCCTCTACGGAAACATGAGATGCACTGCAGGTTCAAGCTGTGGCCTCCATTACCCTGGACAGCAATAAGTTCATCTGTGGGGGTTTTTGTTATTACTTTGCTTCTCGGTCATATTTTTTATGCAGCAATAAATCGAATATCAAAAGTGGAGGATGACTATCGTAAAATGAGGGAGCTGAAAGTTCGTGCTGAAGCTGCGGATGTGGCAAAATCTCAGTTTCTTGCAACCGTTTCACATGAGATCAGGACTCCGATGAATGGTGTTTTAGGTATGCTGCAAATGTTGATGGACACTGACCTCGACGAAACACAGATGGACTACGCCCAAACTGCCCATAGGAGTGGTAACGATCTTATATCGGTGATAAATGAGGTTCTTGATCAGGCGAAGATTGAAGCAAGAAAGCTTCAACTTGAAGCTGCAGCTTTCAAACCACATGCTATTCTAGATGAAGTTCTATCACATTTCTTAGGCAAATCTAATGAGAAAGGAATTGAGTTGGCTGTTTATGCATCCAATCAAGTACCAGAAGTTGTCATTGGTGATCCTAAACGGTTCCAACAAATAATTACTAATCTTGTTGGCAATGCACTCAAGTTCACTAATGATAAAGGACATGTATTAGTCTCGGTTCATCTGGTGAGTGAAGCGAAGAACCCTCTTGATAGTATGGATGAAGTGCTAAGAGAAAGCTTAAACTTGGATCAAGACATCTCAAACAGAACATATAATACATTAAGTGGGTTTCCCGTAAGCAAGAGGTGGCAAAGCTGGGAAAATTTTAAAAACTTTGGTAGCTTAAATATGGATGACACTGAAATGGTTCAACTGCTAGTAACAGTTGAGGATACAGGTATAGGAATACCTACGGATGCACAAAGCCGCATATTCACACCTTTTATGCAGGCTGATAGTTCAACCTCCCGAACATACGGTGGAACTGGAATAGGACTAAGCATTAGTAAATGTCTAGTTGACCTGATGGGAGGAGAAATTGGATTTGTAAGTGATCCTGGAATTGGCAGTACTTTTTCATTTACCGGAACTTTCAGAAAAGGAGATACCACGTCTATTGATGCAGAGTGGCAGAAGTGCAATCTTTTTGCTTCACAGTGCCAAGGTTTGAGAGCGTTGTTGGTAGATAGAAGAAAAGTACGAGCACAGGTTACTAGATATTATCTGCAGAGATTAGGGATGTCTGTGGATGTAACTTCCAGTCTCGAATCCGAATGCTCTTGTGTGCCTAGTACATGCAACATGAGTATGTTGACACAGTTGGCCATGATTCTAATAGACAAGGATGTTTGGGATAAGGAAAATAGTATCTTATTCACCATCAAGAAACACAGACAAAATGGCATCAACATGGACCCAATAAAGTTTCCGAAGATTTTTCTCCTGGCCGCCCACCTTAGCACCAATGAACGTGATGAGCTCAAGTCAATTGGTGTTGTAGATGATGTGCTAGTAAAACCTCTTTGGCTCAGTTATTTGGGTCACTGCTTCAGAGAGTCCCTTGGAGCTGAAAAGAGGCAAACAAAAGGGAAGAGAGCATCAAAACTTGGGAATTTATTAATGCACAAAAGAATTTTGGTGGTTGATGATAATTCAGTGAACAGGAAAGTTGCAGAAGGTGTTCTGCAACGATATGGAGCACTAGTTACTTGTGTGGAGAGTGGCAGGGCTGCTCTACATATGCTTAAGCTACCACATCATTTCGATGCTTGTTTCATGGATCTCCAGATGCCAGAAATGGACGGTTTTGAAGTGACAAGGCAAATCCGCAGTCTAGAGAGTGAGGTAAATGAGAAAATTGCACGTGGGAAAGCATCAGCGGAGATGTATGGTAATATCGCTTATTGGCACACTCCGATACTAGCAATGACAGCCGATGTAACACAAGATTCAAATGAAGAGTGCAGAAAGTGTGGGATGGATGACTATGTGTCAAAGCCATTTGAAGAAGAGCAGCTCTGTATGGCAATGGGTCGTTTCTTTAAGCCTGGTTCATAG 3684 0.4126 MSLNRRFYASNGRLQQQSMKSLKANEPLHGSNSGRTCRRKPLLLLIFGLAAIGGVWFLLSFNSKCLMGKENEAGCEERDRILLDHYNVSKKQLHALASLFSGSDKISSHCIDERRLQMLLSSGILSTSSQLICPENPELQKEHSCVADTVEPIEQCPIPDDCAPTRLELSFLLKKHVALASNSAPSFNLVNYLLSGLNIVQSCKLRVCEIKDLLTSSKLVKGCWWVLIGIIMSFKLSGFCLLWRLGQSVVQKKKLQHFVRVPSKSAGRWRKKFLVIFVSLGIVGSIWLFWHLNMNIMQRREQLLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHDKHPSAINQKIFGEYTESTAFERPLTSGVAYAMKVLHSDRMHFENQHGWTIKKMETENEALVQDCIPENLDPAPVQDEYAPVIFAQETVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHLGVVLTFAVYNTNLPLYATVEQRIEATVGYLGASYDVPSLVEKLLHQLASKQTIVVNVYDTTNVSAPITMYGTDVVDTGLLHISSLDFGDPLRKHEMHCRFKLWPPLPWTAISSSVGVFVITLLLGHIFYAAINRISKVEDDYRKMRELKVRAEAADVAKSQFLATVSHEIRTPMNGVLGMLQMLMDTDLDETQMDYAQTAHRSGNDLISVINEVLDQAKIEARKLQLEAAAFKPHAILDEVLSHFLGKSNEKGIELAVYASNQVPEVVIGDPKRFQQIITNLVGNALKFTNDKGHVLVSVHLVSEAKNPLDSMDEVLRESLNLDQDISNRTYNTLSGFPVSKRWQSWENFKNFGSLNMDDTEMVQLLVTVEDTGIGIPTDAQSRIFTPFMQADSSTSRTYGGTGIGLSISKCLVDLMGGEIGFVSDPGIGSTFSFTGTFRKGDTTSIDAEWQKCNLFASQCQGLRALLVDRRKVRAQVTRYYLQRLGMSVDVTSSLESECSCVPSTCNMSMLTQLAMILIDKDVWDKENSILFTIKKHRQNGINMDPIKFPKIFLLAAHLSTNERDELKSIGVVDDVLVKPLWLSYLGHCFRESLGAEKRQTKGKRASKLGNLLMHKRILVVDDNSVNRKVAEGVLQRYGALVTCVESGRAALHMLKLPHHFDACFMDLQMPEMDGFEVTRQIRSLESEVNEKIARGKASAEMYGNIAYWHTPILAMTADVTQDSNEECRKCGMDDYVSKPFEEEQLCMAMGRFFKPGS* 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1392 1227 PANTHER HISTIDINE KINASE 2 260 1224 - -
Lan2g1392 1227 SUPERFAMILY CheY-like 929 1062 IPR011006 -
Lan2g1392 1227 SMART CHASE_2 341 540 IPR006189 -
Lan2g1392 1227 Pfam Response regulator receiver domain 1087 1217 IPR001789 GO:0000160
Lan2g1392 1227 SMART REC_2 1085 1219 IPR001789 GO:0000160
Lan2g1392 1227 Pfam His Kinase A (phospho-acceptor) domain 626 690 IPR003661 GO:0000155|GO:0007165
Lan2g1392 1227 Gene3D - 1083 1225 - -
Lan2g1392 1227 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 680 904 IPR036890 -
Lan2g1392 1227 CDD HATPase_EvgS-ArcB-TorS-like 743 904 - -
Lan2g1392 1227 Coils Coil 676 696 - -
Lan2g1392 1227 CDD REC_hyHK_CKI1_RcsC-like 1087 1215 - -
Lan2g1392 1227 Pfam CHASE domain 344 538 IPR006189 -
Lan2g1392 1227 SUPERFAMILY CheY-like 1084 1222 IPR011006 -
Lan2g1392 1227 PRINTS Bacterial sensor protein C-terminal signature 834 848 IPR004358 GO:0016310|GO:0016772
Lan2g1392 1227 PRINTS Bacterial sensor protein C-terminal signature 852 862 IPR004358 GO:0016310|GO:0016772
Lan2g1392 1227 PRINTS Bacterial sensor protein C-terminal signature 869 887 IPR004358 GO:0016310|GO:0016772
Lan2g1392 1227 PRINTS Bacterial sensor protein C-terminal signature 893 906 IPR004358 GO:0016310|GO:0016772
Lan2g1392 1227 SMART HisKA_10 626 691 IPR003661 GO:0000155|GO:0007165
Lan2g1392 1227 ProSiteProfiles Response regulatory domain profile. 1086 1223 IPR001789 GO:0000160
Lan2g1392 1227 ProSiteProfiles CHASE domain profile. 341 565 IPR006189 -
Lan2g1392 1227 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 613 692 IPR036097 GO:0000155|GO:0007165
Lan2g1392 1227 CDD HisKA 626 687 IPR003661 GO:0000155|GO:0007165
Lan2g1392 1227 ProSiteProfiles Response regulatory domain profile. 933 1063 IPR001789 GO:0000160
Lan2g1392 1227 Gene3D - 67 106 - -
Lan2g1392 1227 Gene3D - 292 344 - -
Lan2g1392 1227 SMART HKATPase_4 738 909 IPR003594 -
Lan2g1392 1227 Gene3D CHASE domain 345 571 IPR042240 -
Lan2g1392 1227 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 738 904 IPR003594 -
Lan2g1392 1227 Coils Coil 603 623 - -
Lan2g1392 1227 PANTHER TWO-COMPONENT HISTIDINE KINASE 260 1224 - -
Lan2g1392 1227 ProSiteProfiles Histidine kinase domain profile. 633 909 IPR005467 -
Lan2g1392 1227 Gene3D - 597 689 - -
Lan2g1392 1227 Gene3D - 691 910 IPR036890 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1392 Lan-Chr2 24482307 24491048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1392 16 168 Miscellaneous Gene Families AT5G35750 28.144 5.93e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan2g1392 CHASE 1.2e-32 CL0165
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1392 K14489 - gmx:100805107 1924.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1392 2 24482307 24491048 Lan9g1517 9 21670505 21681178 LSH