Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1374 ATGGGTTCTAATTCAGCTGTAGATTTGATGGAGAGTACCTCTAAGGTTCATTATTCTGGACTTCACAATGATGGCTTAAAACAAAGAAGGACGGATGCAGAACAATCAGTAATTACTTCAGAAACTGGCATGCATAAACAACCTTTTATCATAGGAGTTGCTGGAGGTGCAGCATCAGGCAAGACTGCAGTTTGTGATATGATTATTCAGCAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGGTTCTTTTTATCATAATTTGACCGAGGAGGAAGTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTGATACTGAGCAATTACTACGGGTCATGGATAAGTTGAAGCGTGGGCAGGCAGTAGAAATTCCGAAGTATGATTTCAAGGGTTACAAGAACGATGTGTTTCCAGCAAGAAGGGTAAACCCTGCAGATGTTATAATTTTAGAAGGCATTCTTGTCTTTCATGATCCACGTCTTCGGGCATTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGACTGTCAAGAAGGATCAAGCGTGATACTTCTTTGAAGGCTTGGGATATTGGAGCAGTTCTTGATCAGTACTCTAAATTTGTCAAGCCCGCTTTTGATGACTTTATTCTTCCTACAAAGAAATATGCTGATATCATTATACCCCGTGGAGGAGATAATCATGTGGCTATTGATTTGATTGTACAGCATATCCACACAAAGCTCAGTCAGCATGACCTGTGTAAAATATATCCTAATTTATATGTCATTCACTCTACATTTCAGATACGGGGTATGCATACCCTGATACGTGATTCTCAGATAACGAAGCATGATTTTGTATTTTATTCTGACCGTTTGATTCGATTGGTTGTAGAACATGGCCTGGGGCATCTTCCATTTACAGAAAAGCAAGTAACCACACCTACCGGTTCTGTATATAGTGGTGTGGATTTTTGTAAGAGGTTGTGCGGTGTATCCATCATCAGGAGTGGGGAGAGTATGGAGAATGCTTTACGAGCATGTTGCAAAGGTATCAAGATTGGGAAAATTCTTATTCATAGAGAAGGTGGCGACAATGGTCAGCAGCTAATATATGAGAAGTTGCCTAATGATATCTCAGATAGGCATGTGTTACTGTTGGATCCTATCTTAGGCACAGGTAACTCAGCTGTTCAAGCTATTTCCTTACTTTTAAGAAAAGGTGTACCAGAGGCCAACATTATATTTCTCAATCTAATATCAGCACCTCAAGGTGTGCATATGGTCTGCAAAAGCTTTCCTAGAATCAAAATTGTGACATCTGAGATTGAGATTGGCTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGCGAGTTTGGAGATCGGTACTTCGGAACAGATGGCGATGATGAGCAGCAGCAGGTGGTGGTCCCTTCATAG 1446 0.4046 MGSNSAVDLMESTSKVHYSGLHNDGLKQRRTDAEQSVITSETGMHKQPFIIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQGSFYHNLTEEEVTRVQDYNFDHPEAFDTEQLLRVMDKLKRGQAVEIPKYDFKGYKNDVFPARRVNPADVIILEGILVFHDPRLRALMNMKIFVDTDADVRLSRRIKRDTSLKAWDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIHTKLSQHDLCKIYPNLYVIHSTFQIRGMHTLIRDSQITKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVTTPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLLRKGVPEANIIFLNLISAPQGVHMVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDGDDEQQQVVVPS* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1374 481 TIGRFAM udk: uridine kinase 47 249 IPR000764 -
Lan2g1374 481 PRINTS Uridine kinase signature 48 65 - -
Lan2g1374 481 PRINTS Uridine kinase signature 78 89 - -
Lan2g1374 481 PRINTS Uridine kinase signature 123 138 - -
Lan2g1374 481 PRINTS Uridine kinase signature 180 190 - -
Lan2g1374 481 PRINTS Uridine kinase signature 194 205 - -
Lan2g1374 481 PRINTS Uridine kinase signature 216 229 - -
Lan2g1374 481 Pfam Phosphoribulokinase / Uridine kinase family 50 236 IPR006083 GO:0005524|GO:0016301
Lan2g1374 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 241 IPR027417 -
Lan2g1374 481 SUPERFAMILY PRTase-like 250 469 IPR029057 -
Lan2g1374 481 PANTHER URIDINE KINASE 15 471 - -
Lan2g1374 481 CDD UMPK 50 248 IPR000764 -
Lan2g1374 481 PANTHER URIDINE KINASE 15 471 - -
Lan2g1374 481 Gene3D - 44 251 IPR027417 -
Lan2g1374 481 CDD PRTases_typeI 325 441 IPR000836 -
Lan2g1374 481 Gene3D - 252 468 IPR029057 -
Lan2g1374 481 Pfam Uracil phosphoribosyltransferase 266 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1374 Lan-Chr2 24377692 24384867 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1374 1 471 PRT Gene Family AT4G26510 81.568 0.0 792
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1374 K00876 - gmx:100798205 852.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1598 6 23714688 23722247 Lan2g1374 2 24377692 24384867 LSH
Lan6g1598 6 23714688 23722247 Lan2g1374 2 24377692 24384867 PCT
Lan2g1374 2 24377692 24384867 Lan2g1374 2 24377692 24384867 PCT
Lan2g1374 2 24377692 24384867 Lan6g1598 6 23714688 23722247 PCT