Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1351 ATGAGTATTTGGGACTACACAAGGATTTTGTTGGACAAAATTCAGAAATTTGAGCCTGAATATGCTGGAAAGATTATTGGATATTTCCTATCACAAGACAATTGTGAGCAAGAAATGGCTAAGTTGGCTTCATACCATGACTATTACATCCGTGAAGTAGCTTTTAAGGCGAAAATGTACCTTCAAAGTTTCGCTGCTAGACCTGTCATGCTTCCAATCTCACCTCCTCTCAACCCTCAACAAGGTTTCAGCCACTTTTCCGTAATCTCGCCAAGAACTCCTACTTCACTGCCGGGCTTTCAGGTTCCCTCCCCTTCTTGGGATCAACTTTCTGTGAGCAGAACCAATCTAGAACTTATGGCAATAAATTCCTTAGATTCTATGACTAGACTTACAAGGCAGACAGAGTTGTTGAGTTTGGAGAATCACATAGACTCTTTGGATACCGAAACAGGAGGGATTGCTCATGATTATTTTGGTTTAGAGGCTTCTGCTGCTGGTTTTGGTGTAAAAACTAGTAGAAGGCTTTCAAGCCTGTCTGGATTTCGGGTTAAGACATGTCACTATTTCAACAAAGGTTTCTGTAGGCATGGAAGTAGCTGTAGATACTATCACGGTCAAGTTGTATCCGAGAGCTTCCCTCAGATGTATGGAAATGATGCTATGACTGAGGATCAGATGTTTTCGCCGAGGTCACTAGCACAGTTAGAGGCAGAAATTGTTGACCTCATGAAATCAAGAAGAGGAAGGCCATTGTCAATTGCGCTGCTGCCAACGGCGTATCAGGATAAGTATAACAGGATGTTGAAATTTGATGGTTACTTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACGAAGCTTCTTGTGCGACTGAAAAATAGTATTCAGCTGATACAAAGGTGA 915 0.4197 MSIWDYTRILLDKIQKFEPEYAGKIIGYFLSQDNCEQEMAKLASYHDYYIREVAFKAKMYLQSFAARPVMLPISPPLNPQQGFSHFSVISPRTPTSLPGFQVPSPSWDQLSVSRTNLELMAINSLDSMTRLTRQTELLSLENHIDSLDTETGGIAHDYFGLEASAAGFGVKTSRRLSSLSGFRVKTCHYFNKGFCRHGSSCRYYHGQVVSESFPQMYGNDAMTEDQMFSPRSLAQLEAEIVDLMKSRRGRPLSIALLPTAYQDKYNRMLKFDGYLTESQRHGKSGYSLTKLLVRLKNSIQLIQR* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1351 304 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Lan2g1351 304 Gene3D - 178 243 - -
Lan2g1351 304 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 304 - -
Lan2g1351 304 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 184 207 IPR000571 GO:0046872
Lan2g1351 304 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 304 - -
Lan2g1351 304 Pfam OST-HTH/LOTUS domain 232 303 IPR025605 -
Lan2g1351 304 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Lan2g1351 304 SUPERFAMILY CCCH zinc finger 182 207 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1351 Lan-Chr2 24229963 24231734 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g1351 OST-HTH 2.9e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1351 - - lang:109342110 613.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1351 2 24229963 24231734 Lan2g1351 2 24229963 24231734 ECH
Lan2g1351 2 24229963 24231734 Lan11g0043 11 271689 274782 LSH
Lan2g1350 2 24223567 24226904 Lan2g1351 2 24229963 24231734 PCT
Lan2g1351 2 24229963 24231734 Lan2g1350 2 24223567 24226904 PCT