Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1350 ATGAGTATTTGGGACTACACAAGGATTTTGTTGGACAAAATTCAGAAATTTGAGCCTGAATATGCTGGAAAGATTATTGGATATTTCCTATCACAAGACAATTGTGAGCAAGAAATGGCTAAGTTGGCTTCATACCATGACTATTACATCCGTGAAGTAGCTTTTAAGGCGAAAATGTACCTTCAAAGTTTCGCTGCTAGACCTGTCATGCTTCCAATCTCACCTCCTCTCAACCCTCAACAAGGTTTCAGCCACTTTTCCGTAATCTCGCCAAGAACTCCTACTTCACTGCCGGGCTTTCAGGTTCCCTCCCCTTCTTGGGATCAACTTTCTGTGAGCAGAACCAATCTAGAACTTATGGCAATAAATTCCTTAGATTCTATGACTAGACTTACAAGGCAGACAGAGTTGTTGAGTTTGGAGAATCACATAGACTCTTTGGATACCGAAACAGGAGGGATTGCTCATGATTATTTTGGTTTAGAGGCTTCTGCTGCTGGTTTTGGTGTAAAAACTAGTAGAAGGCTTTCAAGCCTGTCTGGATTTCGGGTTAAGACATGTCACTATTTCAACAAAGGTTTCTGTAGGCATGGAAGTAGCTGTAGATACTATCACGGTCAAGTTGTATCCGAGAGCTTCCCTCAGATGTATGGAAATGATGCTATGACTGAGGATCAGATGTTTTCGCCGAGGTCACTAGCACAGTTAGAGGCAGAAATTGTTGACCTCATGAAATCAAGAAGAGGAAGGCCATTGTCAATTGCGCTGCTGCCAACGGCGTATCAGGATAAGTATAACAGGATGTTGAAATTTGATGGTTACTTAACTGAGAGCCAGAGACATGGTAAGTCTGGCTATAGTTTGACGAAGCTTCTTGTGCGACTGAAAAATAGTATTCAGCTGATACAAAGACCAAATGGGCAGCATGCAGTGATTCTGGCCGAAGATGTTTCAAAATACATGCAGAAGGGAGATTTTGGTCAGAACATTAGTGCATCGCTTCAAATATATTTGACATTTCCAGCTGAAAGCACTTTCACAGATGAGGATGTCGCAAACTACTTCAACACATTTGGGTGTGTTGATGATGTAAGGATTCCACCTCAGCAGAGAAGAATGTTTGCATTTGTGACATTTGTTGATCCGGAAACCGTTAAAAGAATTTTGGAAACGGGAAATCCTCATTATGTTAGTGGCTCTAGGGTGCTTGTGAAACCTTATCGAGATAAGCCAAAGGATGATGAAAGGAAGTTCCCGGATAGAATTGATCACCCTGTCAGTTATTCACCACGCTACTCGGAATCCCCCCTGATTTCAAGAAGCTGTGGAAGACGTAGTTTTCTAGCGAGGCAGCAGGTGGAGTATGAGAAGGCCTTTGACTTACAAAGGAGAGGCGCTCTTGCAGAGCTGAAATTCGCTAAAAATAATTTATCCGCTTCTCCCCGACTTGGCCTCTCCATGGATGGGTCAAGAGCTTCAGATGATGCCTTCCATTTAAAGCCTTCCGAATCTATCAGTCATGCGCCGAATGAAAAACCTAAGCAGACAGACTCCAATTCCTCTGATGAGAACAGCATTCAAGGACTCAATCTCCCGGACAGTCCATTTGCATTTCCGATGGTGAGTGGGATATAG 1635 0.43 MSIWDYTRILLDKIQKFEPEYAGKIIGYFLSQDNCEQEMAKLASYHDYYIREVAFKAKMYLQSFAARPVMLPISPPLNPQQGFSHFSVISPRTPTSLPGFQVPSPSWDQLSVSRTNLELMAINSLDSMTRLTRQTELLSLENHIDSLDTETGGIAHDYFGLEASAAGFGVKTSRRLSSLSGFRVKTCHYFNKGFCRHGSSCRYYHGQVVSESFPQMYGNDAMTEDQMFSPRSLAQLEAEIVDLMKSRRGRPLSIALLPTAYQDKYNRMLKFDGYLTESQRHGKSGYSLTKLLVRLKNSIQLIQRPNGQHAVILAEDVSKYMQKGDFGQNISASLQIYLTFPAESTFTDEDVANYFNTFGCVDDVRIPPQQRRMFAFVTFVDPETVKRILETGNPHYVSGSRVLVKPYRDKPKDDERKFPDRIDHPVSYSPRYSESPLISRSCGRRSFLARQQVEYEKAFDLQRRGALAELKFAKNNLSASPRLGLSMDGSRASDDAFHLKPSESISHAPNEKPKQTDSNSSDENSIQGLNLPDSPFAFPMVSGI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1350 544 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 345 400 IPR000504 GO:0003723
Lan2g1350 544 ProSiteProfiles OST-type HTH domain profile. 232 315 IPR025605 -
Lan2g1350 544 MobiDBLite consensus disorder prediction 409 430 - -
Lan2g1350 544 Gene3D - 341 415 IPR012677 -
Lan2g1350 544 MobiDBLite consensus disorder prediction 508 531 - -
Lan2g1350 544 CDD RRM_AtC3H46_like 336 405 IPR034365 -
Lan2g1350 544 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 1 542 - -
Lan2g1350 544 SMART rrm1_1 335 405 IPR000504 GO:0003723
Lan2g1350 544 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 334 409 IPR000504 GO:0003723
Lan2g1350 544 Gene3D - 178 240 - -
Lan2g1350 544 Pfam OST-HTH/LOTUS domain 232 310 IPR025605 -
Lan2g1350 544 ProSiteProfiles Zinc finger C3H1-type profile. 181 208 IPR000571 GO:0046872
Lan2g1350 544 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 542 - -
Lan2g1350 544 MobiDBLite consensus disorder prediction 409 424 - -
Lan2g1350 544 MobiDBLite consensus disorder prediction 494 544 - -
Lan2g1350 544 SUPERFAMILY RNA-binding domain, RBD 346 433 IPR035979 GO:0003676
Lan2g1350 544 SMART c3hfinal6 181 207 IPR000571 GO:0046872
Lan2g1350 544 SUPERFAMILY CCCH zinc finger 182 207 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1350 Lan-Chr2 24223567 24226904 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1350 - - lang:109342110 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1350 2 24223567 24226904 Lan2g1351 2 24229963 24231734 PCT
Lan2g1350 2 24223567 24226904 Lan11g0043 11 271689 274782 PCT
Lan2g1351 2 24229963 24231734 Lan2g1350 2 24223567 24226904 PCT
Lan11g0043 11 271689 274782 Lan2g1350 2 24223567 24226904 PCT