Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1348 ATGCAGATGTCTCATAAGCATAAAATGTCCTATAGCTCCAGCGGCTTCTGCATTGAGCCTGTACAAAATCACGAGTCATATTGCTTCCTACCAAATGAGACCCTAGAAAACTACTCTTCCTCTTTAAATAGCAGCCAAGGTACCTATCCTCCGGTTCACACTTCTACTGGAAGTTTCTCGACTAACAATAGCCCAGTGTCAAAATCATATGTGTTAAGGTCACAACATTATCTTGAAATCATTAATAATTCGCTAGAGAATGAATCTTGCTTGACACACGAAAACGATGATGACCTGAGGCTAAAGATGATAGAACTCGAAAGCGCTATGCTGGGAGCTGATGCAGATATTCTAGACATATATGATATTATGATTCCACAAGAGTCAGATCCTAATTTGTTAGAGGCTGAGAAGTGGAAGAAAATGATGGAGATTGTATATAGAGGGGATTTGAAAGAGATGCTTTGTGCTTGTGCAAAAGCAGTAGAAGGGAATGAGAAGGAGACAACTGAATGGTTGATGTCAGAGTTGCGTAAAATGGTGTCCGTCTCTGGCAACCCGATCCAACGATTGGGAGCTTACGTGTTGGAGGCTCTTGTTGCAAGGCTAGCCTCTTCAGGAAGCACAATCTATAAATCCTTGAAATGTAAAGAGCCGACAAGTAATGAACTCCTTTCATACATGCATGCACTTTATGAAATCTGTCCTTACCTCAAGTTCGGTTATATGTCAGCAAATGGAGCAATTGCTGAAGCCATGAAGGATGAAACTGAAGTCCACATAATTGATTTTCAGATTAATCAGGGAATTCAGTGGGTAAGTCTAATCCGAGCACTTTCTGGTAGACCTGGAGGACCTCCGAAGATTAGAATAACGTGTCTTGATGACTCTACTTCAGCTTATGCAAGAGGAGGGGGACTTGATATTATCGGAGAAAGGTTATCAGGACTTGCCTTGTCATATGAGGTACCTTTTGAGTTCCATGCTATAGATGCTTCTCCTTCCGAGCTTCAACTTGAAGACCTTCAACTTCGATCTGGTGAAGCTATTGCTGTAAATTTTGCCATGATGCTGCACCATGTGCCAGATGGAAGTGTGGATGGTAAGGACTATCGTGACCGATTGTTGAGATTGGCGAAGTGCTTGTCTCCTAAGGTAGTGACTCTAGTTGAGCAAGAATCAAATACCAACAACGTCCCGTTCTTCCCTCGGTTCGTTGAGACATTGAACTACTACTTGGCTATTTTTGAATCAATCGACATTGCTCTTCCAAGGGAGCACAAAGAGAGGATTAATGTGGAACAACATTGTTTGGCTCGAGAAGTTGTCAACTTAATAGCGTGTGAAGGTGCAGAAAGAGTAGAACGTCACGAGCTTATGAATAAGTGGAGATCGCGTTTCACAATGGCTGGATTCACACCATATCCATTGAGCTCCTATATTAATTCCTCAATCAAGAATCTTCAAGAAAGATATGGCAGACACTACACTCTAGAAGAGAGTGATGGTGCTTTATATCTTGGTTGGATGAATCAAGTTATTGTTGCCTCTTGTGCTTGGAGGTGA 1566 0.4189 MQMSHKHKMSYSSSGFCIEPVQNHESYCFLPNETLENYSSSLNSSQGTYPPVHTSTGSFSTNNSPVSKSYVLRSQHYLEIINNSLENESCLTHENDDDLRLKMIELESAMLGADADILDIYDIMIPQESDPNLLEAEKWKKMMEIVYRGDLKEMLCACAKAVEGNEKETTEWLMSELRKMVSVSGNPIQRLGAYVLEALVARLASSGSTIYKSLKCKEPTSNELLSYMHALYEICPYLKFGYMSANGAIAEAMKDETEVHIIDFQINQGIQWVSLIRALSGRPGGPPKIRITCLDDSTSAYARGGGLDIIGERLSGLALSYEVPFEFHAIDASPSELQLEDLQLRSGEAIAVNFAMMLHHVPDGSVDGKDYRDRLLRLAKCLSPKVVTLVEQESNTNNVPFFPRFVETLNYYLAIFESIDIALPREHKERINVEQHCLAREVVNLIACEGAERVERHELMNKWRSRFTMAGFTPYPLSSYINSSIKNLQERYGRHYTLEESDGALYLGWMNQVIVASCAWR* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1348 521 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 88 520 IPR005202 -
Lan2g1348 521 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 88 520 - -
Lan2g1348 521 Pfam GRAS domain family 152 521 IPR005202 -
Lan2g1348 521 ProSiteProfiles GRAS family profile. 142 521 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1348 Lan-Chr2 24213438 24216844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1348 1 521 GRAS Transcription Factor Family AT1G50600 56.180 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lan2g1348 GRAS 7.7e-128 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1348 - - gmx:100817120 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1348 2 24213438 24216844 Lan2g1348 2 24213438 24216844 ECH
Lan2g1348 2 24213438 24216844 Lan2g1348 2 24213438 24216844 PCT