Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1337 ATGGCATCTTCTTCAGACTCATGGGTAAAGGAATATAACGAAGCATTGAAACTTTCTGATGATATCAATCTCATGATTTCTGTATCTCGATCAGAAATCAAGAACCGTCATGTTTCTGCTATAAGAAGAAAGATTACAATACTTGGAACAAGACTTGATACTTTGGATTCAATTTTGTCAAAACACTCTATATCTGATAATGAGATGAATCGTCGTAAGGACTTGATTGCAAATTTGAGATCAAAAGTTGACCAAATGGGTTCTACATTGAATGTATCAAACTTTGCAAATAGGGATAATTTGATTGGACCAGAAATAAAACATGATGTAATGAGTAGAACCGTTGGACTTGATAACAATGGACTAGTTGGACTTCAGCGCCAAATTATGAAAGAACAAGATGAAGGACTTGAGAAGTTGGATGAGACTGTAACAAGTACCAAACATATTGCATTGGCAGTGAATGAAGAACTGGGTCTACACACTACACTCATTGATCACTTGGATCAACATGTTGATGTCACAGATTCTCGGCTGAGGAGGGTGCAGAAGAATTTGGCAGTATTAAATAAACGAACCAAGGGTGGTTGTTCCTGTTTGTGCATGCTTTTATCAGTGGTTGGTATAGTGGTTTTAGTTGTTGCTGTTTGGCTGCTGGTCAAATATTTGTAA 672 0.369 MASSSDSWVKEYNEALKLSDDINLMISVSRSEIKNRHVSAIRRKITILGTRLDTLDSILSKHSISDNEMNRRKDLIANLRSKVDQMGSTLNVSNFANRDNLIGPEIKHDVMSRTVGLDNNGLVGLQRQIMKEQDEGLEKLDETVTSTKHIALAVNEELGLHTTLIDHLDQHVDVTDSRLRRVQKNLAVLNKRTKGGCSCLCMLLSVVGIVVLVVAVWLLVKYL* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1337 223 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 127 189 IPR000727 -
Lan2g1337 223 CDD SNARE_Qc 130 187 - -
Lan2g1337 223 PANTHER TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED 1 217 - -
Lan2g1337 223 Pfam SNARE domain 163 214 IPR000727 -
Lan2g1337 223 Gene3D - 129 191 - -
Lan2g1337 223 SMART tSNARE_6 122 189 IPR000727 -
Lan2g1337 223 SUPERFAMILY SNARE fusion complex 118 188 - -
Lan2g1337 223 PANTHER SYNTAXIN 1 217 IPR045242 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1337 Lan-Chr2 24128145 24129522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1337 1 223 SNARE and Associated Proteins AT1G16240 64.224 3.88e-103 296
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1337 K08503 - gmx:100794038 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1337 2 24128145 24129522 Lan2g1337 2 24128145 24129522 ECH
Lan6g1639 6 25482764 25487362 Lan2g1337 2 24128145 24129522 LSH
Lan6g1639 6 25482764 25487362 Lan2g1337 2 24128145 24129522 PCT
Lan2g1337 2 24128145 24129522 Lan2g1337 2 24128145 24129522 PCT
Lan2g1337 2 24128145 24129522 Lan6g1639 6 25482764 25487362 PCT