Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1328 ATGAGGAAAAGACCGGCGGCCACGGCGGCGATGGAGTTGGTACCTGCGGCGGAGCCACGGTACCGTGGCGTGAGGAAGAGGCCGTGGGGGAGATTCGCGGCGGAGATCAGAGACCCAATAAAGAAAGCAAGGGTATGGCTAGGAACATTCGATTCCGCCGAGGAAGCGGCGCGTGCATACGACGCGGCGGCTGTATCCCTCCGTGGCCCGAAAGCGAAAACAAATTTCCCTATCAACCCTTCACCATTTTATAACCACCACGCCAATGATCCCTACTTCGATCACCACCGTTACTACGCCACCACCGCCGCCAACGGCGGCGGCGCTGGTTTCAATGATCATGGTGTTATTAATCCTCATAGACCAGCTTCTAGTGGTATGAGCAGCACCGTTGAGTCCTTCAGCGGCCCTCGTCCTCCCTCCGCCGTCCCTCCGCCGCAGATGACAAGAAGATATCCTCGTACTCCGCCGCTTGTGGCGGAGGATTGCCATAGCGACTGTGACTCATCGTCTTCGGTTGTTGATGATGGAGACGACATCGCTTCATCGTCGTTTAAAGCGCCGTTACCGTTTGATCTTAATGTGTTGCCGTTAGATGTTGATGCTGAGGTGGCTAACGGTGACGATGAGCTTCAGCGTACCGCTCTCTGTCTCTGA 657 0.5616 MRKRPAATAAMELVPAAEPRYRGVRKRPWGRFAAEIRDPIKKARVWLGTFDSAEEAARAYDAAAVSLRGPKAKTNFPINPSPFYNHHANDPYFDHHRYYATTAANGGGAGFNDHGVINPHRPASSGMSSTVESFSGPRPPSAVPPPQMTRRYPRTPPLVAEDCHSDCDSSSSVVDDGDDIASSSFKAPLPFDLNVLPLDVDAEVANGDDELQRTALCL* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1328 218 PIRSF PTI6 2 87 IPR017392 GO:0003700
Lan2g1328 218 PIRSF PTI6 138 213 IPR017392 GO:0003700
Lan2g1328 218 MobiDBLite consensus disorder prediction 122 149 - -
Lan2g1328 218 SUPERFAMILY DNA-binding domain 20 78 IPR016177 GO:0003677
Lan2g1328 218 CDD AP2 19 79 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 SMART rav1_2 20 83 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 16 197 - -
Lan2g1328 218 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 7 16 197 - -
Lan2g1328 218 MobiDBLite consensus disorder prediction 122 136 - -
Lan2g1328 218 ProSiteProfiles AP2/ERF domain profile. 20 77 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 PRINTS Ethylene responsive element binding protein signature 21 32 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 PRINTS Ethylene responsive element binding protein signature 43 59 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 Pfam AP2 domain 19 69 IPR001471 GO:0003700|GO:0006355
Lan2g1328 218 Gene3D AP2/ERF domain 20 79 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1328 Lan-Chr2 24080928 24082061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1328 18 218 AP2-EREBP Transcription Factor Family AT3G20310 57.456 1.33e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan2g1328 AP2 2.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1328 K09286 - gmx:100820249 216.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1328 2 24080928 24082061 Lan2g1328 2 24080928 24082061 ECH
Lan2g1328 2 24080928 24082061 Lan9g1483 9 21509897 21510998 LSH
Lan2g1328 2 24080928 24082061 Lan11g0068 11 399890 400920 LSH
Lan2g1328 2 24080928 24082061 Lan2g1328 2 24080928 24082061 PCT
Lan2g1328 2 24080928 24082061 Lan11g0068 11 399890 400920 PCT
Lan2g1328 2 24080928 24082061 Lan9g1483 9 21509897 21510998 PCT
Lan9g1483 9 21509897 21510998 Lan2g1328 2 24080928 24082061 PCT
Lan11g0068 11 399890 400920 Lan2g1328 2 24080928 24082061 PCT