Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1309 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAGGAAGAGATTCAAGATTCTATTGATAAGTTGCAATCTACTTTTCACCAATGGGAAAACACTCCTGATGCTGGGGAGCGATCACATCTTTCAAAGGAAGTTCTTACCGGCTGTGAAAGTATTAAATGGCAGGTGGATGAATTGGACAAAGCAATTGCTGTAGCATCTAGAGATCCTTCTTGGTATGGCATTGATGAATTGGAGATTGAAAACCGTAAGAGGTGGACCAGCAGTGCTCGTACCCAGGTGCGGACAGTGAAGAAAGCTGCTGAAGCTGAAAACGGTCCAAATAAAACAAACCATGCTAGTGTCAATGGGATGCACAGGGAATTAATGAGGCATCCAAATTCTCATCAATCTGATATATCCAACAATTATGCTGCCCAAGATAGTGATGATTTCATAGAATCAGAATCAGATAGACAGATGCTTCTAATAAAGAGGCAGGATGAGGAGTTGGATGAGCTTACTTTGAGTGTACAAAGAATTGGAGGTGTTGGACTTACAATACACGAAGAACTCCTAGCACAGGAAAAGATTATCGATGAACTTGGTTCTGAGATGGACAGTACATCTAATCGTCTAGATTTTGTCCAAAAAAAAGTTGGAATGATCATGAAGAAGGCTAGTGTAAAGGGCCAGATCATGATGATATTGGGTTTGCTGGCTTTGTTCATTTTCCTCTTTATCTTGGTATTCTTCACTTAG 741 0.4076 MPSAQDPFYVVKEEIQDSIDKLQSTFHQWENTPDAGERSHLSKEVLTGCESIKWQVDELDKAIAVASRDPSWYGIDELEIENRKRWTSSARTQVRTVKKAAEAENGPNKTNHASVNGMHRELMRHPNSHQSDISNNYAAQDSDDFIESESDRQMLLIKRQDEELDELTLSVQRIGGVGLTIHEELLAQEKIIDELGSEMDSTSNRLDFVQKKVGMIMKKASVKGQIMMILGLLALFIFLFILVFFT* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1309 246 CDD SNARE_Qc 157 213 - -
Lan2g1309 246 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 154 216 IPR000727 -
Lan2g1309 246 Coils Coil 192 212 - -
Lan2g1309 246 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Lan2g1309 246 PANTHER SYNTAXIN PROTEIN 1 245 - -
Lan2g1309 246 Gene3D - 161 225 - -
Lan2g1309 246 SUPERFAMILY t-snare proteins 5 100 IPR010989 GO:0016020|GO:0016192
Lan2g1309 246 Coils Coil 12 32 - -
Lan2g1309 246 Gene3D - 2 103 - -
Lan2g1309 246 SMART tSNARE_6 149 216 IPR000727 -
Lan2g1309 246 PANTHER SYNTAXIN 1 245 IPR045242 -
Lan2g1309 246 SUPERFAMILY SNARE fusion complex 152 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1309 Lan-Chr2 23968710 23972407 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1309 55 246 SNARE and Associated Proteins AT1G28490 66.667 1.52e-89 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1309 K08500 - gmx:100793612 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0978 4 13278766 13282694 Lan2g1309 2 23968710 23972407 LSH
Lan4g0978 4 13278766 13282694 Lan2g1309 2 23968710 23972407 PCT
Lan2g1309 2 23968710 23972407 Lan2g1309 2 23968710 23972407 PCT
Lan2g1309 2 23968710 23972407 Lan4g0978 4 13278766 13282694 PCT