Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1304 ATGAGAAGACCCAAATCAAAGGATTTCAAGAAGCAACAACGAATTTCAGAAGAAACCGAGATAGAATTATTGAAGTCATGGATCCAAACACAGCAAGTAGATTCTGGTTCAAACCCTATGTCACTTCCTCCACTTCCAAAAAACGCACCCATTGGGCGCGTGGATGAAAACACGTTTTCGCGGTATGCGGGTGTGGCGAATTTCAATCAGCTTCCACTGTCGAAGAAAACGAAGGATGGTTTGAAAGATGGAAAATTTGTGAGCATGACTGATATACAAAGAGCGTCTCTTCCTCACGCGCTATGTGGACGTGATATTCTCGGTGCTGCAAAAACTGGTTCTGGAAAAACCCTTGCTTTCATTATCCCTGTGTTAGAGAAGCTATACAGAGAGAGATGGGGACCTGAAGATGGGGTCGGCAGCATCATCATATCTCCTACAAGGGAATTAGCTGGTCAGCTGTTTGATGTGCTCAAGTCTGTCGGGAAGCACCATAATTTTAGTGCTGGACTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAGGAACGTGTCAATGAGCTTAACATATTGATCTGCACGCCCGGTCGCCTTCTGCAGCACATGGACGAAACTCCCAATTTTGATTGTTCTCAGATGCAGGTTTTGGTGCTGGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCACAACTACCAAAGCGTAGGCAAACCTTGCTTTTCTCTGCAACTCAAACTAAATCAGTTCAAGATCTTGCAAGGCTAAGTTTGAAGGACCCAGAGTATCTGAGTGTTCACGAAGAGTCTGTGAGTGCCACTCCTACACTCTTGAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTAGATATGGTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAATACTTGTCTTTCTTTCAAGCTGCAAGCAGGTAAAATTTGTCTATGAAGCATTTAAGAAACTTCATCCTGGTATTCCGTTGAAATGTCTTCATGGGAGGATGAAACAAGAAAGAAGAATGGCCATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTGCACCGATGTGGCTGCAAGAGGACTCGACTTCAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCAGAAAATGTGGCATCTTACATACACAGAGTCGGTCGTACTGCTCGTTATAAATCTGGTGGGAAGTCAGTTTTATTTCTTTTGCCCTCTGAAATTCAGATGCTTGAAAAGTTTAAAGCAGCGAAAGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTTCTGCAACCAGTTTCTGCTTTGTTGGCATCTTTACTAGCCAAGTACCCGGACTTGCAGCCTCGCGCTCAAAGGGCATTCATCACATATTTGAGATCCATACATCTCCAAAAGGATAAAGAGATATTTGATGTTACGAAACTACCTATCGATGAATATTCAGCATCATTAGGTTTGCCAATGACTCCGAAAATCCGTTTTCTCAACCAGAAAATCAAATCTAAGGCTGTGTCAAAAGAACAAATTTCAGCTGAACCTGAGAGCCCAAAGAAAGAAAATGCATTAATGGTCACAAAAAAGAAGTTAGCCACAGATGATTCCGACGATGAGGAAGAAGAAAATGATCTTCTTTTGGCAGCAGATACCTTAAATGAAGACGATGAGGCGAAGGCATCTCCCAATCTTTGA 1737 0.4266 MRRPKSKDFKKQQRISEETEIELLKSWIQTQQVDSGSNPMSLPPLPKNAPIGRVDENTFSRYAGVANFNQLPLSKKTKDGLKDGKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTLLFSATQTKSVQDLARLSLKDPEYLSVHEESVSATPTLLKQIVMVVPLDQKLDMVWSFIKTHLQSKILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFCTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKFKAAKVPVHFNKPRKELLQPVSALLASLLAKYPDLQPRAQRAFITYLRSIHLQKDKEIFDVTKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSKEQISAEPESPKKENALMVTKKKLATDDSDDEEEENDLLLAADTLNEDDEAKASPNL* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1304 578 SMART ultradead3 85 289 IPR014001 -
Lan2g1304 578 CDD DEADc_DDX10 77 275 - -
Lan2g1304 578 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 427 IPR027417 -
Lan2g1304 578 MobiDBLite consensus disorder prediction 550 565 - -
Lan2g1304 578 Gene3D - 283 556 IPR027417 -
Lan2g1304 578 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Lan2g1304 578 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Lan2g1304 578 MobiDBLite consensus disorder prediction 522 578 - -
Lan2g1304 578 Gene3D - 53 278 IPR027417 -
Lan2g1304 578 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Lan2g1304 578 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 57 527 - -
Lan2g1304 578 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lan2g1304 578 MobiDBLite consensus disorder prediction 522 549 - -
Lan2g1304 578 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lan2g1304 578 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Lan2g1304 578 PANTHER RNA HELICASE 57 527 - -
Lan2g1304 578 CDD SF2_C_DEAD 286 417 - -
Lan2g1304 578 SMART DUF4217_3 447 510 IPR025313 -
Lan2g1304 578 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Lan2g1304 578 SMART helicmild6 325 408 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1304 Lan-Chr2 23931371 23935145 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1304 65 425 Eukaryotic Initiation Factors Gene Family AT3G19760 28.142 7.10e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1304 K14776 - gmx:100792106 967.222