Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1303 ATGAGAAGACCCAAATCAAAGGATTTCAAGAAGCAACAACGAATTTCAGAAGAAACCGAGATAGAATTATTGAAGTCATGGATCCAAACACAGCAAGTAGATTCTGGTTCAAACCCTATGTCACTTCCTCCACTTCCAAAAAACGCACCCATTGGGCGCGTGGATGAAAACACGTTTTCGCGGTATGCGGGTGTGGCGAATTTCAATCAGCTTCCACTGTCGAAGAAAACGAAGGATGGTTTGAAAGATGGAAAATTTGTGAGCATGACTGATATACAAAGAGCGTCTCTTCCTCACGCGCTATGTGGACGTGATATTCTCGGTGCTGCAAAAACTGGTTCTGGAAAAACCCTTGCTTTCATTATCCCTGTGTTAGAGAAGCTATACAGAGAGAGATGGGGACCTGAAGATGGGGTCGGCAGCATCATCATATCTCCTACAAGGGAATTAGCTGGTCAGCTGTTTGATGTGCTCAAGTCTGTCGGGAAGCACCATAATTTTAGTGCTGGACTCCTCATTGGTGGTCGCAAGGATGTTGACATGGAGAAGGAACGTGTCAATGAGCTTAACATATTGATCTGCACGCCCGGTCGCCTTCTGCAGCACATGGACGAAACTCCCAATTTTGATTGTTCTCAGATGCAGGTTTTGGTGCTGGATGAGGCTGATCGTATTCTTGACAGTGGATTCAAGAGGGAACTAAATGCAATCATCTCACAACTACCAAAGCGTAGGCAAACCTTGCTTTTCTCTGCAACTCAAACTAAATCAGTTCAAGATCTTGCAAGGCTAAGTTTGAAGGACCCAGAGTATCTGAGTGTTCACGAAGAGTCTGTGAGTGCCACTCCTACACTCTTGAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTAGATATGGTGTGGAGTTTCATAAAGACACATCTTCAGTCAAAAATACTTGTCTTTCTTTCAAGCTGCAAGCAGGTAAAATTTGTCTATGAAGCATTTAAGAAACTTCATCCTGGTATTCCGTTGAAATGTCTTCATGGGAGGATGAAACAAGAAAGAAGAATGGCCATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTGCACCGATGTGGCTGCAAGAGGACTCGACTTCAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCAGAAAATGTGGCATCTTACATACACAGAGTCGGTCGTACTGCTCGTTATAAATCTGGTGGGAAGTCAGTTTTATTTCTTTTGCCCTCTGAAATTCAGATGCTTGAAAAGTTTAAAGCAGCGAAAGTTCCAGTGCATTTTAACAAGCCAAGGAAAGAACTTCTGCAACCAGTTTCTGCTTTGTTGGCATCTTTACTAGCCAAGTACCCGGACTTGCAGCCTCGCGCTCAAAGGGCATTCATCACATATTTGAGATCCATACATCTCCAAAAGGATAAAGAGATATTTGATGTTACGAAACTACCTATCGATGAATATTCAGCATCATTAGGTTTGCCAATGACTCCGAAAATCCGTTTTCTCAACCAGAAAATCAAATCTAAGGCTGTGTCAAAAGAACAAATTTCAGCTGAACCTGAGAGCCCAAAGAAAGAAAATGCATTAATGGTCACAAAAAAGAAGTTAGCCACAGATGATTCCGACGATGAGGAAGAAGAAAATGATCTTCTTTTGGCAGCAGATACCTTAAATGAAGACGATGAGGCGAAGGCATCTGAAATTGGAGAAGTCATACCTGCAACTCGTGTGTCGAAGAAAAAGAAGCTCAAGATTAATGTACATAGACCACTGGGGACTAGGGTTGTATTTGATGATGAAGGCAATACTCTTGCTCCATTAGCTAGGATTGCTGACACGCAAAGCGGCAAGGAGTCTATGCTTCTTGACCCAGAACAAAAGGCTGAATACTATAGAAGGATGCGGGAGGATTTGAAGAAGGCAGACAAGGAAGACAAGCTTGTCGATCGTCAGCGTCGTAGAGAAAAAAGAATCAAGCAGAAGATGAAGTTGAAGGAAGTGGATGAAGAAGATGATATGTCCGAGTCAGAAGAGGAAGAAACCGCTGATAGACGGAATAAAAGGAAGAAAGTATACTTTGATAGTGATAGTGATAGTGACGATGGCGATCTAAATGAAGACACCGGGAAAGCAGGTGTTACTTTGGAGGAACAGGAAGCACTGGCTTTGAAATTGTTAGATTCCATGCAATCATAG 2223 0.4269 MRRPKSKDFKKQQRISEETEIELLKSWIQTQQVDSGSNPMSLPPLPKNAPIGRVDENTFSRYAGVANFNQLPLSKKTKDGLKDGKFVSMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQLFDVLKSVGKHHNFSAGLLIGGRKDVDMEKERVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKRELNAIISQLPKRRQTLLFSATQTKSVQDLARLSLKDPEYLSVHEESVSATPTLLKQIVMVVPLDQKLDMVWSFIKTHLQSKILVFLSSCKQVKFVYEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFCTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKFKAAKVPVHFNKPRKELLQPVSALLASLLAKYPDLQPRAQRAFITYLRSIHLQKDKEIFDVTKLPIDEYSASLGLPMTPKIRFLNQKIKSKAVSKEQISAEPESPKKENALMVTKKKLATDDSDDEEEENDLLLAADTLNEDDEAKASEIGEVIPATRVSKKKKLKINVHRPLGTRVVFDDEGNTLAPLARIADTQSGKESMLLDPEQKAEYYRRMREDLKKADKEDKLVDRQRRREKRIKQKMKLKEVDEEDDMSESEEEETADRRNKRKKVYFDSDSDSDDGDLNEDTGKAGVTLEEQEALALKLLDSMQS* 741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1303 740 PANTHER RNA HELICASE 58 533 - -
Lan2g1303 740 SMART ultradead3 85 289 IPR014001 -
Lan2g1303 740 MobiDBLite consensus disorder prediction 668 724 - -
Lan2g1303 740 CDD DEADc_DDX10 77 275 - -
Lan2g1303 740 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Lan2g1303 740 Gene3D - 53 278 IPR027417 -
Lan2g1303 740 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 58 533 - -
Lan2g1303 740 Coils Coil 668 688 - -
Lan2g1303 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 294 456 IPR001650 -
Lan2g1303 740 Gene3D - 283 539 IPR027417 -
Lan2g1303 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 427 IPR027417 -
Lan2g1303 740 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Lan2g1303 740 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Lan2g1303 740 Pfam Domain of unknown function (DUF4217) 452 508 IPR025313 -
Lan2g1303 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Lan2g1303 740 Pfam DEAD/DEAH box helicase 90 261 IPR011545 GO:0003676|GO:0005524
Lan2g1303 740 MobiDBLite consensus disorder prediction 688 706 - -
Lan2g1303 740 CDD SF2_C_DEAD 286 417 - -
Lan2g1303 740 SMART DUF4217_3 447 510 IPR025313 -
Lan2g1303 740 SMART helicmild6 325 408 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1303 Lan-Chr2 23924665 23929507 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1303 65 433 Eukaryotic Initiation Factors Gene Family AT3G19760 27.321 7.55e-37 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1303 K14776 - gmx:100792106 1164.44