LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan2g1281	ATGGAGTTTGATCCAAATATGGAAGCAGAAACAGAAGGGTGTTCTTCTAATCAGAAAAAAACTGGAAGAGGGAAAATAGAAATCAAGAGGATCGAGAACACAACAAATAGGCAAGTTACTTTTTGCAAGCGCCGCAATGGGTTGCTGAAGAAAGCATATGAATTATCAGTATTGTGTGATGCAGAAGTTGCTCTTGTTGTTTTCTCTAACCGTGGCCGTCTCTATGAATATGCCAACAACAGTGTTAGAGGAACTATTGAAAGGTACAAAAAAGCATCTGCTACTTCCACAAACGCAGAATCTGTATCTGAAGCTAATACACAGTTTTATCAGCAGGAGTCATCTAAATTGAAAAGGCAGATCCGAGACATTCAGAATTTAAACAGGCACATCCTTGGTGAATCACTTAGCTCTCTGAGTCTAAAGGAACTAAAGAACCTTGAAAGTAGATTGGAGAAAGGTTTAAGCAGAGTTAGATCTAGAAAGCATGAAACATTGTTTGCTGACGTGGAGTTCATGCAAAAGAGGGAAGTTGAGCTACAAAACCATAATAATTTTCTGCGAGCTAAGATAACTGAATATGAGAGAGCACAGCAACAGCAACAAAATATGGTGCAGCAGGGAAATGTGTGCGAGACCATAGCATCACAACCATATGACAGGAATTTCTTCCCAGTAAATCTCCTAGATTCCAATCATCAATATTCCCGTCAAGACCACACTGCTCTCCAACTTGTCTGA	741	0.3968	MEFDPNMEAETEGCSSNQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVRGTIERYKKASATSTNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGESLSSLSLKELKNLESRLEKGLSRVRSRKHETLFADVEFMQKREVELQNHNNFLRAKITEYERAQQQQQNMVQQGNVCETIASQPYDRNFFPVNLLDSNHQYSRQDHTALQLV*	247

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan2g1281	246	ProSiteProfiles	K-box domain profile.	107	197	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan2g1281	246	ProSitePatterns	MADS-box domain signature.	23	77	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	ProSiteProfiles	MADS-box domain profile.	21	81	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	30	77	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	Coils	Coil	110	130	-	-
	Lan2g1281	246	PANTHER	MADS-BOX TRANSCRIPTION FACTOR ARLEQUIN	15	238	-	-
	Lan2g1281	246	SMART	madsneu2	21	80	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	15	238	-	-
	Lan2g1281	246	CDD	MADS_MEF2_like	22	96	IPR033896	GO:0000977\|GO:0045944
	Lan2g1281	246	Coils	Coil	184	204	-	-
	Lan2g1281	246	MobiDBLite	consensus disorder prediction	1	22	-	-
	Lan2g1281	246	Gene3D	-	33	134	IPR036879	GO:0003677\|GO:0046983
	Lan2g1281	246	PRINTS	MADS domain signature	23	43	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	PRINTS	MADS domain signature	43	58	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	PRINTS	MADS domain signature	58	79	IPR002100	GO:0003677\|GO:0046983
	Lan2g1281	246	Coils	Coil	141	161	-	-
	Lan2g1281	246	Pfam	K-box region	105	191	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Lan2g1281	246	SUPERFAMILY	SRF-like	22	99	IPR036879	GO:0003677\|GO:0046983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan2g1281	Lan-Chr2	23764232	23770505	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan2g1281	12	246	MADS-box Gene Family	AT2G42830	69.231	5.98e-118	335

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Lan2g1281		K-box	5.3e-25	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan2g1281	K09264		-	gmx:100792224	391.734

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan2g1281	2	23764232	23770505	Lan2g1281	2	23764232	23770505	PCT