Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1274 ATGGAAAAACATTATAGGGATTCTATGCCAGCTTATGGTGCTGAAGGTTCGTCTGAGATTTTCTCACTCAATATTGCGAAAAAAGTTGGAAGCAGCGCATGGGGAATACCAAGCATGGCTGATGCATTTCATGCTTCGAGTGATGTTAGCTTGTTTTCTAGTTCACTTCCTGTTCTTCCTCATGAAAAGCTAAATTTTACTGATTCTGAGCACTATGGTCAATCTGCTGATGATAACTTGCCAATATTAGACAAAGTTCACAAGGAGGGCGAGGGACAAGATCCACTTGAAGACATTACAACCAATGCAATGGAAAACATGCTTCCTGATGATGAAGATGAGCTGTTAGCTGGGATAATGGACGATTTTGACCTGAGTAGGTTGCCCAACCAGCTGGAGGATCTGGATGAAAATGATCTTTTTGGTAGTGGAGGCGGGTTTGAAATGGATTTTGAACCCCAAGAGGGCCTTAGTATCGGTATTTCAAAGATAAGCTTATCTGATGGAGTCCCTTCAAATGGTTTTGGTCATTTTGCAATCCTAAATGGCACAGGAGCGGTGGTTGGGGAGCATCCTTATGGAGAGCATCCATCAAGGACATTATTTGTGAGAAACATCAACAGTAATGTGGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGAGATATCAGAACATTGTACACCGCATGCAAGCATAGAGGCTTTGTGATGATTTCTTACTATGATATTCGAGCTGCTCGCACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAGCTTGATATTCATTTTTCAATTCCTAAGGATAACCCCTCAGAAAAGGATATTAATCAAGGAACCCTTGTAGTGTTCAATTTGGATCCATCAGTATCAAATGACGACCTTCGTCAAATATTTGGAGCTTATGGGGAGGTCAAAGAGATCAGGGAAACGCCTCATAAAAGGCACCATAAATTTATTGAATTTTATGATGTTAGAGCAGCAGAGGCTGCACTTAAAGCATTAAATCGAATTGACATTGCTGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGAGCACGTCGAAACTTGATGCAACAAATGACTGAGCTGGAGCAAGATGAAACTCGAACTTTTAGACATCATGTGGGTTCACCTATTGCCAATTCTCCTCCTGGAAATTGGGCACACTTTGGGAGTCCAGTTGAACATAATCCATTAGGTTCTTTTAGTAAATCTCCTGGTTTGAGTTATGGCAGCCCTATGAATACCAGCCATTTGCCCGGATTAGGAGCAATTCTTTCTCCACATGCGTCAACCTCTCCAAAGATTGCGCCAATTGGTAAGGACCTTGGAAGGGCTAATAATGCAAATCAAACTTTTTCAAGCTCTGGTTCTTCACAAGGAGCGGCTTTTCAGCCTTCTATGTCCTTTCCCGAGCATAAAGTAAATTCTAGCCCTAGGCCTATATCTACTTTTGGTGAATCAAAGTCAAGTTCTTCAAGTGTTGGAACACTGTCTGGTCCTCAATTTCTGTGGGGAAGTCCAACTCCTTACTCGGAGCATTCAAACACATCTGCCTGGTCTTCAACTTCCGGGGGGCTTCCATTTACTTCTAGTGGACAAAGGCAGGGTTTCCAATATACTAGTCGGCACAATTCGTTTCTTGATTCTCACCCGCATCATCATGTTGGATCCGCTCCATCTGGCCTTCCTTTTGATAGGCATTTTAACTACTTTCCAGAGTCAGTCGAAACATCTGTCAAGAGTTCAGTTGCATATGGAAGTTTGAATCACAGCGATGATAATTATTTTATGAACATGGGTGCTCGTGCACCTGTAGGAGTTGTTACTGGCTTTCCAGGAAATAGGACTGAAATTAGTTCACCTAATTTCAGAATGATGTCACTCCCTAGGCATGGATCCTTGTTCCTTGGAAATGGTTTGTATTCTGGACCAGGAGCAACAAACACCGAGGGATTAACTGAACGTGGTCGAAGTAAGCAACCTGACAATAGTGGGAACCAAATTGATAGCAAGAAGCACTACCAACTTGATCTAGACAAAATTATGAGGGGAGAAGACACAAGGACAACATTAATGATTAAAAACATTCCTAACAAGTACACTTCAAGTTTGCTGCTTGCTGCTATTGATGAGAATCACAAGGGTAGTTATGACTTCCTCTATTTGCCAATTGACTTTAAGAACAAGTGCAATGTGGGCTATGCTTTCATCAACATGGTGTCTCCTTCACACATCATCCCCTTCTACAAGGCATTTAATGGGCAGAAGTGGGAGAAGTTTAATAGTGAAAAAGTTGCTTCACTGGCATATGCACGTATCCAGGGGAAGGGTGCCCTTGTGACACATTTTCAGAATTCTAGCCTAATGAACGAGGATAAGCGGTGTCGACCAATTCTCATTCATTCAGAGGGCCAAGAGATTGGTAACCAGGAACATTTCCTCTCAAGCAATTTGAATATATGCATTCGTCAACCGGATGGTTCTTACTCAGATGAAAAGGTTGAGAAAGATTGA 2541 0.4219 MEKHYRDSMPAYGAEGSSEIFSLNIAKKVGSSAWGIPSMADAFHASSDVSLFSSSLPVLPHEKLNFTDSEHYGQSADDNLPILDKVHKEGEGQDPLEDITTNAMENMLPDDEDELLAGIMDDFDLSRLPNQLEDLDENDLFGSGGGFEMDFEPQEGLSIGISKISLSDGVPSNGFGHFAILNGTGAVVGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRAARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDINQGTLVVFNLDPSVSNDDLRQIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRIDIAGKRIKLEPSRPGGARRNLMQQMTELEQDETRTFRHHVGSPIANSPPGNWAHFGSPVEHNPLGSFSKSPGLSYGSPMNTSHLPGLGAILSPHASTSPKIAPIGKDLGRANNANQTFSSSGSSQGAAFQPSMSFPEHKVNSSPRPISTFGESKSSSSSVGTLSGPQFLWGSPTPYSEHSNTSAWSSTSGGLPFTSSGQRQGFQYTSRHNSFLDSHPHHHVGSAPSGLPFDRHFNYFPESVETSVKSSVAYGSLNHSDDNYFMNMGARAPVGVVTGFPGNRTEISSPNFRMMSLPRHGSLFLGNGLYSGPGATNTEGLTERGRSKQPDNSGNQIDSKKHYQLDLDKIMRGEDTRTTLMIKNIPNKYTSSLLLAAIDENHKGSYDFLYLPIDFKNKCNVGYAFINMVSPSHIIPFYKAFNGQKWEKFNSEKVASLAYARIQGKGALVTHFQNSSLMNEDKRCRPILIHSEGQEIGNQEHFLSSNLNICIRQPDGSYSDEKVEKD* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1274 846 Gene3D - 189 282 IPR012677 -
Lan2g1274 846 MobiDBLite consensus disorder prediction 453 505 - -
Lan2g1274 846 CDD RRM1_MEI2_like 198 274 IPR034453 -
Lan2g1274 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 201 265 IPR000504 GO:0003723
Lan2g1274 846 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 286 351 IPR000504 GO:0003723
Lan2g1274 846 PANTHER PROTEIN MEI2-LIKE 2 15 843 - -
Lan2g1274 846 SUPERFAMILY RNA-binding domain, RBD 699 783 IPR035979 GO:0003676
Lan2g1274 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 284 357 IPR000504 GO:0003723
Lan2g1274 846 CDD RRM3_MEI2_like 700 785 IPR034454 -
Lan2g1274 846 SUPERFAMILY RNA-binding domain, RBD 196 359 IPR035979 GO:0003676
Lan2g1274 846 MobiDBLite consensus disorder prediction 522 544 - -
Lan2g1274 846 CDD RRM2_MEI2_like 283 353 - -
Lan2g1274 846 Gene3D - 283 382 IPR012677 -
Lan2g1274 846 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 199 272 IPR000504 GO:0003723
Lan2g1274 846 MobiDBLite consensus disorder prediction 441 505 - -
Lan2g1274 846 Pfam RNA recognition motif 2 697 793 IPR007201 -
Lan2g1274 846 SMART rrm1_1 285 353 IPR000504 GO:0003723
Lan2g1274 846 SMART rrm1_1 200 268 IPR000504 GO:0003723
Lan2g1274 846 SMART rrm1_1 699 775 IPR000504 GO:0003723
Lan2g1274 846 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 843 - -
Lan2g1274 846 MobiDBLite consensus disorder prediction 655 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1274 Lan-Chr2 23712824 23719603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1274 194 391 Eukaryotic Initiation Factors Gene Family AT3G16380 24.658 2.81e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1274 - - gmx:100812324 1358.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1274 2 23712824 23719603 Lan9g1449 9 21305496 21311152 LSH