Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1254 ATGAACAACAACATTCCTAGTTGGAATTTTGAGAGTGATACATTTGTCACCAATCAAAAGAGATCCATAGGGCCAGACCAAGAACTTGTAGAGCTCCTATGGCAAAATGGGCAAGTAGTTTTCAACAGCCAAACACAAAAGAAACAAGTTGGAAATTCATCTGATATGAGACAGGTTCAGAAAAATGAGGGGTCAACTTTGAGGACTAGTGTACCTTATGGAAACTCAAGTAATTTGAGTCAAGAAGATGAGACAATTTCATGGCTCCAATACCCTCTTGAGGATCCATTGGAACAACAATTTAGTTCAAACTTTTTACCTGAAATAGCGCCTTTTCAAGTTGAGTCTTATAAGCCAATCAAGCAATTGGAAGAAGAAAATTTTGCCAAAATTGTTCAGCCTAGTGCTCCTCATGCAACTTCAAATTCACAATCACCTAATATGAAACCTTCTTGTGTTAAGGAATTCCAAGCAAATCCTGTGCCTGTTCCGAAATTTCATGTTCCTGATTCATCTAAACAAACCAATGACTTAGGTAGAACAAAAAAGGTTCCAAAATTTTCAGGCTTTTCGGCACCTCCTAATGTTTCTTCCGTACCTGCTAATGCTCTAGTTGGAAAGAAAGTTAGTACAAATATGTCAAAAAATGAAGGCAAAGAGTGTTCAGTGATGACGGTTGGTTCAAGTCACTGTGGCAGCAATCACATACCTCAGGAACCAGGTGTAAGCATGGTATCAAGTAGTGGTTGGGCTACTACTTTATCTGCTGAAACTGAAGCTGCAAGAGATTATGTCCAGAGAACACTCCCTTGGAGCGAAAAGGGAAAGTCGGAGATGGTTGAACCGAATTTGACATCATCTTCTGGTGGCTCAGGCAGTAGTCTTGGAAAAACATGTTCCCTGTCAACAGGAAATCTTGGCCAAAAGAGAAAAAGGACTGATGCAGAAGAATCAGAGGAACAAAGTGAGGCCACAGAACTTAAGTCAGGTATTGGCAGCAAGGCATCACAACATGCAGGGTCTTCCCGAAGAAACCGGGCAGCTGAAGTCCACAATCTATCCGAAAGGAGAAGAAGAGATAGAATCAATGAGAAGATGAGGGCATTGCAGCAACTAATACCAAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAAGCAATTGAATACTTGAAATCACTTCAGTTACAGCTTCAGGTAATGTGGATGGGGGGTAGCATGTCACCAATGATGTTTCCAGGAATTCAACATTATATGTCACAAATGAGTATGGGAATGGCTGCACCTTCTATTCAAAACTCAATGCAATTACCAAGAGTACCTATTGATCAATCCATGCCTCAAAATCCAGTTTTGGGTGCATTTAATTACCAAAATCAGATGCAAAATTCATTCCTTGCAGAACAATATGCACGTTACATGGGTTGTCACCTTATGCAAAGTGCAACTCAGCCAATGAATGCATATAGATATGGTTCACAGACACTACTACAAGGTCAAACAATGATCACACCCACTACTGGTGCAGCCAATATGGATGATCCTATGAGTGCCAAAATGGGTAAGGTTCATCCACATTTAAATGAAGAGAAGTAA 1599 0.4021 MNNNIPSWNFESDTFVTNQKRSIGPDQELVELLWQNGQVVFNSQTQKKQVGNSSDMRQVQKNEGSTLRTSVPYGNSSNLSQEDETISWLQYPLEDPLEQQFSSNFLPEIAPFQVESYKPIKQLEEENFAKIVQPSAPHATSNSQSPNMKPSCVKEFQANPVPVPKFHVPDSSKQTNDLGRTKKVPKFSGFSAPPNVSSVPANALVGKKVSTNMSKNEGKECSVMTVGSSHCGSNHIPQEPGVSMVSSSGWATTLSAETEAARDYVQRTLPWSEKGKSEMVEPNLTSSSGGSGSSLGKTCSLSTGNLGQKRKRTDAEESEEQSEATELKSGIGSKASQHAGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQLQLQVMWMGGSMSPMMFPGIQHYMSQMSMGMAAPSIQNSMQLPRVPIDQSMPQNPVLGAFNYQNQMQNSFLAEQYARYMGCHLMQSATQPMNAYRYGSQTLLQGQTMITPTTGAANMDDPMSAKMGKVHPHLNEEK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1254 532 CDD bHLH_AtPIF_like 346 408 - -
Lan2g1254 532 Gene3D - 341 402 IPR036638 GO:0046983
Lan2g1254 532 MobiDBLite consensus disorder prediction 45 79 - -
Lan2g1254 532 MobiDBLite consensus disorder prediction 344 361 - -
Lan2g1254 532 SMART finulus 352 401 IPR011598 GO:0046983
Lan2g1254 532 MobiDBLite consensus disorder prediction 279 308 - -
Lan2g1254 532 MobiDBLite consensus disorder prediction 325 343 - -
Lan2g1254 532 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 409 IPR036638 GO:0046983
Lan2g1254 532 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Lan2g1254 532 MobiDBLite consensus disorder prediction 309 324 - -
Lan2g1254 532 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 4 509 IPR031066 -
Lan2g1254 532 MobiDBLite consensus disorder prediction 166 192 - -
Lan2g1254 532 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Lan2g1254 532 PANTHER TRANSCRIPTION FACTOR PIF5 4 509 - -
Lan2g1254 532 MobiDBLite consensus disorder prediction 511 532 - -
Lan2g1254 532 MobiDBLite consensus disorder prediction 273 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1254 Lan-Chr2 23589274 23593840 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1254 8 514 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.048 2.60e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan2g1254 HLH 6.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1254 K16189 - gmx:100784531 645.58