Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1251 ATGATAACCACTATCCTCAGTAGAACCCCTCCAATCCTTTCAACTCGTGCTTTCATTGCCATAGCCTCCGTTTCCACCAAACCCATTCTCCACCGCCTCGCCGTCGTAACCCCCTCCGCCGGCAACCCTTTAAGCTTCTCCGGCTTATCAGTGTCGAAAGCGCGTGCCTTTCACTCGAATTCAACTCCATTGAATTTCCATGCCTCTTCGGTATCTAGGGCTGGATATGCTGCTGTAGCTGATTACGCAGTGGAAGAGGATACGAAAGTGAATAGCGCTGATGAAGGACTTGAAGTTGCAAAGTTAGGGATTTCTCAGGAGATTGTTTCTGCTCTGTCAAAAAAAGGCATAACCAAACTCTTCCCTATTCAGGGGGCTGTGTTGGAACCTGCTATGCAAGGTCGCGATATGATTGGTCGAGCTAGAACTGGAACTGGAAAAACTCTTGCCTTTGGGATACCTGTCATGGATAAAATCATTAAGTTTAATGCCGAACATGGCAGACGAGGAAAGAGTCCTTTGGCTTTGGTTTTGGCTCCAACCAGAGAGCTCGCACGACAGGTTGAGAAGGAGTTCACTGATGCAGCTCCAAACTTGGAAACAATTTGTGTTTATGGTGGGACACCTATCTCTCAACAAATGAGACAGCTTGGTTATGGTGTTGATATCGCAGTAGGAACACCTGGTCGAATTATTGACCTTCTCAACAGAGGTGCTCTAAATTTGAAGGAAGTTCAATTTGCTGTTATTGATGAAGCTGATCAGATGCTTCAAGTGGGCTTCCAAGAAGATGTGGAGAAGATTTTGGCATGGTTGCCCCCAAAGCGTCAGACCCTTATGTTCTCTGCAACAATGCCATCCTGGATAAAGGATATTACACGCAAATACCTAAAAAACCCTCTAACCGTTGATCTCGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACATTGTACTCAATTGCAACCGATTCTTATGTTAAAGCGGGAACCCTTGGACCATTAGTAAAAGAACATGCAAAAGGAGGAAAGTGTATTGTTTTCACTCAAACCAAACGTGAGGCTGATCGGTTATCATATGCCATGGCAAAAACTATTCAATGTCAGGCCTTGCATGGAGATATATCACAAGCTCAGAGGGAAAGAACTCTTGCTGGCTTCAGAAATGGCCATTTTAATGTTTTAGTGGCAACTGATGTTGCTTCACGTGGGCTTGATATACCAAATGTTGATCTTGTAATACATTATGATCTTCCCAATTCTTCAGAGATATTTGTTCACCGATCAGGACGAACAGGCCGTGCTGGTAAGAAAGGAGCTGCTATTCTTGTTTATACAGCAAATCAAACCAGGGCTGTTAGGACTATTGAGCGTGATGTAGGCTGTAAATTTACAGAGCTACCAAAGATTGCTGTTGCACCTGGGTCAGTGGACACATTTAGTGGCATGGGTGGTGGGCGATTTAGTTCTCCTGGAGGTTCAAGGGATCGTCGATCTGGTGATTCAGGTTTTGGACGTAGTGGGGGCTACGGTAACTCTGGGTCTGGCCGCTCTAGTTATGGAAATTCTGGTGGTTCAAGTCGTTTTGGCACATCTGATGGACAAAGCTCTGGTCGTTATGGCTCCTCTGGTGGCTATGGTTCAGGTCAATCAGGAAGCAGGCAATCTGGTGGTTTTGGGGGATTTGGTAGTTCAGATCGTTCTGGAGGTTTTGGAGATTTTGGCTCCGGTTCATTCGGTGGTTCCCGTGATGGTGGTGATCGGAGCAATAAGGGAAGTCCCTTCTAA 1791 0.4562 MITTILSRTPPILSTRAFIAIASVSTKPILHRLAVVTPSAGNPLSFSGLSVSKARAFHSNSTPLNFHASSVSRAGYAAVADYAVEEDTKVNSADEGLEVAKLGISQEIVSALSKKGITKLFPIQGAVLEPAMQGRDMIGRARTGTGKTLAFGIPVMDKIIKFNAEHGRRGKSPLALVLAPTRELARQVEKEFTDAAPNLETICVYGGTPISQQMRQLGYGVDIAVGTPGRIIDLLNRGALNLKEVQFAVIDEADQMLQVGFQEDVEKILAWLPPKRQTLMFSATMPSWIKDITRKYLKNPLTVDLVGDSDQKLADGITLYSIATDSYVKAGTLGPLVKEHAKGGKCIVFTQTKREADRLSYAMAKTIQCQALHGDISQAQRERTLAGFRNGHFNVLVATDVASRGLDIPNVDLVIHYDLPNSSEIFVHRSGRTGRAGKKGAAILVYTANQTRAVRTIERDVGCKFTELPKIAVAPGSVDTFSGMGGGRFSSPGGSRDRRSGDSGFGRSGGYGNSGSGRSSYGNSGGSSRFGTSDGQSSGRYGSSGGYGSGQSGSRQSGGFGGFGSSDRSGGFGDFGSGSFGGSRDGGDRSNKGSPF* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1251 596 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 46 520 - -
Lan2g1251 596 Pfam DEAD/DEAH box helicase 121 291 IPR011545 GO:0003676|GO:0005524
Lan2g1251 596 SMART helicmild6 357 437 IPR001650 -
Lan2g1251 596 MobiDBLite consensus disorder prediction 507 563 - -
Lan2g1251 596 Pfam Helicase conserved C-terminal domain 336 437 IPR001650 -
Lan2g1251 596 CDD SF2_C_DEAD 317 446 - -
Lan2g1251 596 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 53-LIKE 46 520 - -
Lan2g1251 596 Gene3D - 329 478 IPR027417 -
Lan2g1251 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 128 303 IPR014001 -
Lan2g1251 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 332 476 IPR001650 -
Lan2g1251 596 MobiDBLite consensus disorder prediction 482 596 - -
Lan2g1251 596 CDD DEADc 108 304 - -
Lan2g1251 596 Gene3D - 98 307 IPR027417 -
Lan2g1251 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 458 IPR027417 -
Lan2g1251 596 SMART ultradead3 116 320 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1251 Lan-Chr2 23569043 23573454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1251 83 469 Eukaryotic Initiation Factors Gene Family AT3G19760 32.658 1.14e-69 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1251 - - ahf:112702088 724.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1251 2 23569043 23573454 Lan9g1434 9 21204251 21208705 PCT
Lan9g1434 9 21204251 21208705 Lan2g1251 2 23569043 23573454 PCT