Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1250 ATGGCTTTTTTTAGGAACTCTCAAAATGATACAGTCTCACATAGTGTCATGGATGATAAAGTCCAAGGACAGAATGCTAATAGAGTGCATACATTGGTCGGTAATGAATTTGCTGATGCAACTTATAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGTGAACCTGATGGTGCCAGTAGAGTGCAAAACAAGGCAGCAACTGATGATGGAGTTGCTACAAGAGAATCAAACATACAGACTGCTGGTAGTAAAGCAGCTATGTCCGGAAGGTGGGGTTCAACGTTTTGGAAGGACTGCCAGCCTACCCGCCCACAGAGTGGTTCTGAATCGGGACATGAAGATTGTTCTGAAGGTAATTCATTGGATGGAAGAGGGGAAAGATTAGACTCAGAAGATGATGATGAACAAAAGGAAGCAGGAAAAGGTCCAGTAGGCCATCCTGATGTTCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGATGGGGAAGAGCAACATAGCTCATTGCATCAGCGCATTCATATGCCCGCTGGATCGAATTCTTGGCCTCCACGGGTGTCCACTACTGTCAATAGAAATTCGAATAGAAAATCTAGGATTTCAGATGATGATGATAACGTTGATAATGATGGTGATGCTGATTATGAAGAGGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCACAAGTGTCCATGCAGCAAACAAGGATAAAGATTGGGAAGGTGAAGGCTCATATGAAGATGATGATAGTGATGAAAATATAGATGTCTCAGATGATGATGACTCTCGCTATGGTAAAAAACCTAAGGGAAGGCAACGAGGCAAAGTTGTAAAAGACCTAAAATCTACTAGAGATCGCAAAACATATCCTTTATCTGGCCGACAAAGAAGAGTTAAATCAACTTTTGAAGATGACGAGTCAATAGCAGAGGATTTTGACAGTGATAGTGACGAGGATTTCAAAAGCATAAAAAAGAGAGGTATTCATGTCCGCAAGAATAATGGCCGCTCTTCTGCATCCACAAGTTTTTCTATCCGCAACAATGAAGTCCGCACTTCTACTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGATGAAAGTGAAGAAGCCGATGAAGGGAAGAAGAAAAAGTCTCAAAAGGAAGAAATTGAAGACGACGATAGCGACTCCATTGAAAAGGTGCTTTGGCATCAGCCGAGGGGCATGGCTGAAGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTAATTCTGAAGTTGACTGGAATGAGATGGAATTCTTGATAAAATGGAAAGGCCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTGCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAGATTATGGAGGATATCAGGCACAGGAAGACTATCTCAAGAGAGGAGATTGAGGTCAATGATGTCAGCAAGGAGATGGATTTGGATATTATCAAACAGAACAGTCAGGTCGATAGAATTATTGCAGATAGGATCAGCAAGGTTAATTCTGGAACAGTTGTTCCAGAATACTTGGTCAAGTGGCAAGGGCTATCTTATGCTGAAGCAACTTGGGAAAAGGACACTGACATCACTTTTGCTCAACATGTCATTGATGAGTATAAGGATCGTGAAGCTGCAATGTCGATGGTTCAAGGAAAGACGGTAGATTCCCAGCGTAAGAAGAGCAAAGCAAGTTTGCGTAAACTTGAGGAACAACCCCAATGGTTGAAAGGTGGGAAGCTCCGTGATTATCAACTCGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGGAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTCCAGTCGGTATCAATGCTAGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCATTGTCAACTTTATCCAACTGGGCCAAAGAATTCCGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTACTCGTGCAAGTCGAGAGGTTTGTCAACAGTACGAGTTTTATGATGATAAAAAGGCTGGTAGACCTATAAAATTTAATGCACTATTGACTACATACGAAGTAGTTTTGAAGGATAAGGCTGTGCTCTCTAAGATCAAATGGAGTTATCTTATGGTAGATGAGGCTCATAGGCTTAAAAATAGCGAGGCACAGTTGTATACAGCACTTTTAGAATTTAGCACCAAGAATAAGTTGCTTATCACTGGTACTCCTCTGCAGAACAGTGTTGAAGAGCTATGGGCTTTGCTCCACTTCCTTGACGCTGACAAGTTCAAGAGCAAGGATGATTTTGTTCAGAATTATAAGAATTTGAGTTCTTTCAATGAGAATGAGCTTGCGAATCTTCATATGGAATTGAGGCCTCACATTCTTCGAAGAGTTATAAAAGATGTGGAGAAATCATTACCTCCAAAAATTGAGCGCATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTACAAGTGGATTTTGGAACGCAACTTTCAAGATTTGAACAAAGGAGTCCGTGGTAACCAGGTTTCTCTTCTCAATATTGTGGTGGAATTGAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCTGTTGATAACAGTAAGCTAGAGAGAATTGTCTTTAGCAGTGGCAAGCTGGTCATACTTGATAAGCTACTTGTTAGATTGCATGAAACCAAACATCGTGTTCTAATATTCTCTCAGATGGTTAGAATGCTGGATATACTGGCAGAGTATATGTCACTTCGAGGTTTTCAATTTCAGAGGCTCGATGGCAGTACAAAAGCTGAGCTTCGACAGCAGGCGATGGAGCATTTCAATGCACCTGGAAGTGATGATTTCTGCTTCCTTCTTTCAACGCGAGCAGGGGGTCTGGGCATCAACCTTGCCACAGCAGACACTGTAATAATATTTGATTCAGATTGGAATCCCCAAAATGACTTGCAGGCAATGAGTAGAGCCCATAGAATTGGGCAGCAGGAAGTTGTTAATATATATCGGTTTGTAACCAGCAAAAGTGTTGAGGAAGATATATTGGAACGTGCTAAGAAGAAAATGGTTCTCGACCACTTGGTGATTCAAAAACTTAATGCAGAGGGTAGACTGGAGAAGAAAGAGGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAATTGTCCGCAATCTTACGGTTTGGGGCTGAGGAGCTTTTCAAGGAAGAAAGAAATGATGAAGAGAGCAAGAAACGACTCTTAAGTATGGATATAGATGAGATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGAGGGAGAAGATGGACACGAGTTATTAAGTGCATTTAAGGTTGCCAATTTCCGTAATGATGAAGACGATGGAAGTTTCTGGAGTCGGATGATAAAGGCAGATGATGTATTCCAAGCAGAGGAAGCTCTTGCTCCACGTTCTGCAAGGAATATTAAAAGCTATGCGGAAGCTAATGAGTTTGAAAGAAGTAACAAAAGAAAAAAGAAGGAACCTGAACCTCCTGAACGAGTTCAGAAACGCCGGAAAGCGGAGTATTCAGGTCCTGCAGTACCAATGATTGAGGGAGCATCTGCCCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTCAAATTTTCTCGTGCGGTTATGAAATATGGAAACAAGAGTCAGATCAATCTAATTGCTGCTGAGGTTGGTGGTGCTGTTGGATCAGCTCCAACTGAAGCACAGACTGAACTCTTCAATGCTCTAATTGATAGCTGTACTGAAGCAGTCGAACTCGGAAGTCAGGATCTGAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCAGTTAAGGCAAATGATCTACTTACCCGTGTCCAGGAACTTCAACTCCTGGCAAAGCGCATCAGTCGATATGAAGATCCCATTGCACAATTCCGTGTTTTATCATATCTCAAACCTTCAAACTGGTCGAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGACTGCTTCTAGGAGTACATTACCATGGATTTAGTAATTGGGAGAGGATTAGATTAGATGACAGGCTTGGTCTTACGAAAAAGATTGCACCAGTAGAACTTCAACACCATGAAACTTTCTTGCCAAGAGCTCCAAATTTGAGAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCTGTTCTTGGTGGAAACCGTGCCAATAGCAGAGTTGGCCAGAAGCCTTCCAAGAAAGAGAGAGAACATATGATGAACAACTCACTTTTGCGTGGGCAGGAGAAGAAAAAACCAGGTTCTGCTAAAGCTAATGTCCAGCTGAGAAGGGATAGACTTCACAAACCCCAAAATGTTGAACCTATAGTAAAAGAGGAGGGCGAAATGTCTGACAATGACGAAGTATATGAGCAATTCAAGGAGGTAAAATGGATGGAGTGGTGTCAAGATGTGATGGTTGACGAAATGAAAACCTTGAAACGTCTTCACAGATTGCAGACAACAAGTGCCAATCTTCCTAAGGAAACGGTGCTTTCAAAGATACGCAACTATTTGCAACTTCTTGGTCGAAGGATAGATCAAATTGTGTTAGATCATGAAGTGGAACCCTACAAGCAAGACACAGGGATGACTGTGCGACTCTGGAAATATGTCTCCACCTTTTCCCATCTCTCAGGGGAAAGGCTTCATCAAATATATTCCAAACTTAAACAGGAGCAACAAGATGAGGCAGGGGTTGGCCCCTCTCATGTCAATGGTTCTGTATCTGTTCCATTTAGCAGAAATGGAAACCCATTCTCTCGGCATATGGAGAGGCAAAGAGGATTCCAGAATATGACTCACTACCAAATGTCAGAACCAGTTAATAATACAGGGAAATCTGAGGCATGGAAACAGAGAAGAGCTGAAAGTGTCGATCAACTCCAGAGTCACCCGCCACCTCAAAGAACCACGAGTAATGGAATTCGGATTTCTGATCCTAGTGCACAAGGCATTCTAGGGGCTGGACCATCTGACAAACGTTTTGTTGGTGAGAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCAAAACAAGGCTTCTCTTCAGGATAA 5226 0.4192 MAFFRNSQNDTVSHSVMDDKVQGQNANRVHTLVGNEFADATYSEKEFDMNMEAQYESDGEPDGASRVQNKAATDDGVATRESNIQTAGSKAAMSGRWGSTFWKDCQPTRPQSGSESGHEDCSEGNSLDGRGERLDSEDDDEQKEAGKGPVGHPDVPAEEMLSDEYYEQDGEEQHSSLHQRIHMPAGSNSWPPRVSTTVNRNSNRKSRISDDDDNVDNDGDADYEEEDEADEDDPDDADFEPATSVHAANKDKDWEGEGSYEDDDSDENIDVSDDDDSRYGKKPKGRQRGKVVKDLKSTRDRKTYPLSGRQRRVKSTFEDDESIAEDFDSDSDEDFKSIKKRGIHVRKNNGRSSASTSFSIRNNEVRTSTRTVRKVSYVESDESEEADEGKKKKSQKEEIEDDDSDSIEKVLWHQPRGMAEDAQRNNRSTEPVLMSHLFNSEVDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDIRHRKTISREEIEVNDVSKEMDLDIIKQNSQVDRIIADRISKVNSGTVVPEYLVKWQGLSYAEATWEKDTDITFAQHVIDEYKDREAAMSMVQGKTVDSQRKKSKASLRKLEEQPQWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGTRASREVCQQYEFYDDKKAGRPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEELWALLHFLDADKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFQDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSVDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILAEYMSLRGFQFQRLDGSTKAELRQQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEDGHELLSAFKVANFRNDEDDGSFWSRMIKADDVFQAEEALAPRSARNIKSYAEANEFERSNKRKKKEPEPPERVQKRRKAEYSGPAVPMIEGASAQVRNWSYGNLSKRDALKFSRAVMKYGNKSQINLIAAEVGGAVGSAPTEAQTELFNALIDSCTEAVELGSQDLKGPLLDFFGVPVKANDLLTRVQELQLLAKRISRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGVHYHGFSNWERIRLDDRLGLTKKIAPVELQHHETFLPRAPNLRDRANALLEQELAVLGGNRANSRVGQKPSKKEREHMMNNSLLRGQEKKKPGSAKANVQLRRDRLHKPQNVEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMVDEMKTLKRLHRLQTTSANLPKETVLSKIRNYLQLLGRRIDQIVLDHEVEPYKQDTGMTVRLWKYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHVNGSVSVPFSRNGNPFSRHMERQRGFQNMTHYQMSEPVNNTGKSEAWKQRRAESVDQLQSHPPPQRTTSNGIRISDPSAQGILGAGPSDKRFVGEKPYRTQPGGFPSKQGFSSG* 1742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1250 1741 MobiDBLite consensus disorder prediction 257 273 - -
Lan2g1250 1741 Pfam Chromo (CHRromatin Organisation MOdifier) domain 519 573 IPR023780 -
Lan2g1250 1741 Coils Coil 1123 1143 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 75 93 - -
Lan2g1250 1741 Gene3D - 520 572 - -
Lan2g1250 1741 Gene3D - 391 518 - -
Lan2g1250 1741 SMART helicmild6 955 1039 IPR001650 -
Lan2g1250 1741 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 929 1080 IPR001650 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 121 148 - -
Lan2g1250 1741 CDD CD2_tandem 516 572 - -
Lan2g1250 1741 Pfam Helicase conserved C-terminal domain 926 1039 IPR001650 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 290 320 - -
Lan2g1250 1741 Coils Coil 1069 1089 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1200 1231 - -
Lan2g1250 1741 Pfam SNF2-related domain 630 899 IPR000330 GO:0005524|GO:0140658
Lan2g1250 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 599 832 IPR027417 -
Lan2g1250 1741 SUPERFAMILY Chromo domain-like 497 573 IPR016197 -
Lan2g1250 1741 Gene3D - 842 1070 IPR027417 -
Lan2g1250 1741 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 835 1115 IPR027417 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 189 203 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 348 374 - -
Lan2g1250 1741 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 741 750 IPR002464 -
Lan2g1250 1741 Gene3D - 1336 1444 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1 25 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 44 407 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 104 120 - -
Lan2g1250 1741 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1 115 1659 - -
Lan2g1250 1741 SMART DUF4208_2 1507 1613 IPR025260 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 375 407 - -
Lan2g1250 1741 SUPERFAMILY Chromo domain-like 401 485 IPR016197 -
Lan2g1250 1741 ProSiteProfiles Chromo and chromo shadow domain profile. 405 493 IPR000953 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 213 238 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1200 1228 - -
Lan2g1250 1741 CDD CD1_tandem 403 483 - -
Lan2g1250 1741 CDD SF2_C_SNF 915 1050 - -
Lan2g1250 1741 Pfam Domain of unknown function (DUF4208) 1519 1612 IPR025260 -
Lan2g1250 1741 SMART chromo_7 516 575 IPR000953 -
Lan2g1250 1741 SMART chromo_7 404 486 IPR000953 -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1662 1741 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1617 1645 - -
Lan2g1250 1741 SMART ultradead3 607 806 IPR014001 -
Lan2g1250 1741 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 115 1659 - -
Lan2g1250 1741 MobiDBLite consensus disorder prediction 1683 1703 - -
Lan2g1250 1741 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 623 795 IPR014001 -
Lan2g1250 1741 ProSiteProfiles Chromo and chromo shadow domain profile. 518 574 IPR000953 -
Lan2g1250 1741 Gene3D - 602 841 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1250 Lan-Chr2 23538191 23556780 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1250 633 1066 RAD5 or RAD16-like Gene Family AT1G02670 26.139 3.63e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lan2g1250 SNF2_N 3.5e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1250 K11367 - gmx:100808039 2841.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1250 2 23538191 23556780 Lan2g1250 2 23538191 23556780 ECH
Lan2g1250 2 23538191 23556780 Lan11g0135 11 838835 857149 LSH