Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1247 ATGGAAGGGTTCAGAATGACTTCGGATCTTAATAGCACGGGTCCTGTTGAAAGAGACATTGAGCAGGCCATTACCGCTTTAAAGAAAGGGGCTTACTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTTTGCCCCTTTCGGCTTTCCAACGATGAATCTATTTTGGTATGGTTTTCAGAGAGAGAAGAGAAGCACCTGAAACTGAGCCATGTCTCTAGAATTATATCTGGACAACGCACGCCTATCTTTCAAAGATATCCGCGACCTGAGAAGGAGTACCAGTCTTTTTCTCTTATCTACAACGATAGGTCACTGGACTTGATTTGCAAGGATAAAGACGAAGCCGAGGTTTGGTTCAGTGGTCTGAAAGCATTAGTTTCACGTAGCCATCACCAAAAGTGGAGGTCTGAATCAAGAAGTGATGGTGTTTCATCTGAAGCTAATAGTCCCCGAACATACACTAGAAGATGTTCACCTTTAAATTCTCCATTTGGTAGTAATGACAGCTTGCAAAAGGATAGCGGGGATCACCTTCATAGCCCATATGAGAGCCCCCCTAAGAATGGTTCGGGCAAAGCATTTTCTGATGTGGTTCTGTATGCTATTCCTCCAAGTGGTTTCTTCCCTCCAGATTCTGCCAGTGGCTCAGTCCACTCTGTATCACCCGGAGGATCAGATATTATGCATGGTCACATGAAGACAATGGGTATGAATGCTTTTAGAGTTAGTCTATCGAGTGCTTTCAGCTCATCTAGCCAAGGTTCTGGTCATGATGATGGTGATGCTTTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTATTTTAGGTGGTGGGACTCACCGAGTTGGGAGTTGTTTGAGAGTAAAAATGGATTCTCTAATTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAACATTGCTTGTGGTGGACAACATGCAGCCTTAGTGAGCAAACAAGGCGAAATTTTATCGTGGGGGGAGGAATCAGGAGGCAGGCTTGGGCATGGTGTTGAATCTGATATTCTTCACCCAAAGCTTATAGAATCTCTAAGTAATACAAATATCGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTTTATACATGGGGTGATGGCACATATAATTATGGTCTTCTGGGGCATGGAAATCAAGTGAGCCACTGGGTCCCAAAAAGAGTAAATGGACCCTTGGAGGGCATACATGTTTCATCTATTTCTTGTGGACCATGGCATACTGCTGTCGTAACCTCTGCTGGGCAATTATTTACTTTTGGTGATGGTACATTTGGTGTTCTGGGTCATGGAGACCGAAAAAATGTGTCCTTGCCAAGGGAAGTAGAGTCCCTCAAAGGTCTTCGTATTGTACGGGCTGCTTGTGGGGTCTGGCATACTGCTGCAGTTGTTGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCAGGGAAGCTTTTTACTTGGGGTGATGGAGACAAGGGTCGACTTGGGCATGGTGATAAGGAAGCAAAACTTGTTCCAACCCGTGTTGCATCCCTCGACGAACTCAGTTTTTGTCAAGTTGCTTGTGGACATAGTCTGACTGTTGTACTTACAACTTCAGGCCATGTCTATACAATGGGCAGTCCTGTTTATGGCCAGTTAGGAAATCCTCAAGCCGATGGGAAGCTACAAGCCCGTGTAGCGGGTAAGCTTTCGATGAGTTTTGTGGAGGAGATAGCTTGTGGTGCCTATCATGTTGCAGTTTTAACGTCGAGGACTGAAGTTTACACTTGGGGGAAGGGTGCCAATGGTCGTTTAGGCCATGGGGATACAACTGATAGAAATACCCCAACATTAGTAGAAGCTCTGAAAGACAAACAAGTCAAAAGTATTGCTTGCGGTACTAATTTCACTGCAGCTATCTGTCTGCACAAGTGGGTGTCTGGTGTTGACCAGGCTATGTGTTCTGGTTGTCGTCTTCCATTTACTTTCAAAAGAAAACGACACAATTGTTACAATTGCGGACTTGCGTATTGCCACTCTTGTAGCAGTAAGAAGTGTCTTAGGGCTTCAATGGCACCGAACCCCAACAAACCCTATCGTGTCTGTGATAATTGTCTTAATAAACTAAGGAAATCTATTGAAGCTGATCCTTCTCGTTCTTCTGCGAGTAGAAGAGGAAGTATCAGTCTGGGGTCACTTCAGTTAATTGATAAAAAGGATGATAAATTGGATACCAGATCTCGTAATCAACTTGCCAGATTTTCTTCAATGGAATCCTTTATACAAATGGAAAGCAAGTCTTCAAAGAAAAACAAAAAAATGGAATTCAACAGTAGCCGTGTCTCACCTGTTCCAAATGGGGCTTCACAATGGGGAGCACTGAATATTTCTAAATCTTTAAATCCAGTTTTTGGACCATCGAAGAAGTTCTTCTCAGCTTCAGTTCCTGGATCTAGAATTGGTTCCCGGGCAACATCCCCTATATCTAAACGGCCTAGTCTACCTCGTTCAACTACTCCAATTCCAACACTAGGAGGTCTTATTTCACCAAAGATAGTTGTGGATGATGTTAAGAAGACGCGTTATAGCCTTAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAGCCTGACTCAGAAAGCCCAACATCAAGAAATTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCCATAGCAGTTGCCAGGGAGGAAACTGCCAAATGTAAAGCAGCCAAAGAAGTGATCAAGTCACTTACTGCTCAGTTTAAGGACGTGGTTGAGAGGATACCTGTAGGAGCAGCTAGGAATGTCAAATCACCTTCTTCTATTGCTTCATTTGGTTCAATACCGGGTTCCGATGAAGTTAGCTATGCTTCCATTGATCAGTTGAGTATTCAAGCAACGAGCCCAGAAGCAGACTTCACTGCATTGAATAACCAGTTACTTTCCAATGGATCAAGTACCATCAGCAACCGTAGTGCTGGTCACAATAAACAGAGCCAGTCACATGCAACTAATAGAAGTGGGAGCAGAACTAAGGATCGTAATTCCCGTTATGAGACAGAATGGGTTGAACAAGATGAACCTGGTGTATATATTACTCTCACCTCCCTACCAGGAGGTGTAATAGAACTTAAGAGAGTTCGCTTCAGTCGGAAGCGGTTTAGTGAGAAGCAAGCTGAGCAATGGTGGGCAGAGAATCGTGCAAGAGTATATGAGCAATATAAGGTGTGCATTATTGACAAGTCCACTGTTGGTACTGGGAGCGAAGACCTGGCTCATTGA 3321 0.4387 MEGFRMTSDLNSTGPVERDIEQAITALKKGAYLLKYGRRGKPKFCPFRLSNDESILVWFSEREEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALVSRSHHQKWRSESRSDGVSSEANSPRTYTRRCSPLNSPFGSNDSLQKDSGDHLHSPYESPPKNGSGKAFSDVVLYAIPPSGFFPPDSASGSVHSVSPGGSDIMHGHMKTMGMNAFRVSLSSAFSSSSQGSGHDDGDALGDVFIWGEGTGDGILGGGTHRVGSCLRVKMDSLIPKALESAVVLDVQNIACGGQHAALVSKQGEILSWGEESGGRLGHGVESDILHPKLIESLSNTNIELVACGEYHTCAVTLSGDLYTWGDGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSSISCGPWHTAVVTSAGQLFTFGDGTFGVLGHGDRKNVSLPREVESLKGLRIVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEAKLVPTRVASLDELSFCQVACGHSLTVVLTTSGHVYTMGSPVYGQLGNPQADGKLQARVAGKLSMSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTTDRNTPTLVEALKDKQVKSIACGTNFTAAICLHKWVSGVDQAMCSGCRLPFTFKRKRHNCYNCGLAYCHSCSSKKCLRASMAPNPNKPYRVCDNCLNKLRKSIEADPSRSSASRRGSISLGSLQLIDKKDDKLDTRSRNQLARFSSMESFIQMESKSSKKNKKMEFNSSRVSPVPNGASQWGALNISKSLNPVFGPSKKFFSASVPGSRIGSRATSPISKRPSLPRSTTPIPTLGGLISPKIVVDDVKKTRYSLSQEVIKLRSQVESLTQKAQHQEIELERTTKQLKDAIAVAREETAKCKAAKEVIKSLTAQFKDVVERIPVGAARNVKSPSSIASFGSIPGSDEVSYASIDQLSIQATSPEADFTALNNQLLSNGSSTISNRSAGHNKQSQSHATNRSGSRTKDRNSRYETEWVEQDEPGVYITLTSLPGGVIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYKVCIIDKSTVGTGSEDLAH* 1107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1247 1106 Gene3D - 19 136 IPR011993 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 326 IPR000408 -
Lan2g1247 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 313 323 IPR000408 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 602 653 IPR000408 -
Lan2g1247 1106 ProSiteProfiles BRX domain profile. 1033 1088 IPR013591 -
Lan2g1247 1106 SUPERFAMILY FYVE/PHD zinc finger 654 723 IPR011011 -
Lan2g1247 1106 SMART fyve_4 652 721 IPR000306 GO:0046872
Lan2g1247 1106 MobiDBLite consensus disorder prediction 132 191 - -
Lan2g1247 1106 MobiDBLite consensus disorder prediction 997 1034 - -
Lan2g1247 1106 MobiDBLite consensus disorder prediction 1020 1034 - -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 498 549 IPR000408 -
Lan2g1247 1106 CDD FYVE_like_SF 663 715 - -
Lan2g1247 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 472 482 IPR000408 -
Lan2g1247 1106 MobiDBLite consensus disorder prediction 997 1019 - -
Lan2g1247 1106 SUPERFAMILY RCC1/BLIP-II 264 655 IPR009091 -
Lan2g1247 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 327 375 IPR000408 -
Lan2g1247 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 378 430 IPR000408 -
Lan2g1247 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 497 546 IPR000408 -
Lan2g1247 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 434 482 IPR000408 -
Lan2g1247 1106 Pfam Regulator of chromosome condensation (RCC1) repeat 603 650 IPR000408 -
Lan2g1247 1106 Gene3D - 496 664 IPR009091 -
Lan2g1247 1106 Gene3D - 247 495 IPR009091 -
Lan2g1247 1106 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 20 1092 - -
Lan2g1247 1106 CDD PH_PLC_plant-like 18 128 - -
Lan2g1247 1106 MobiDBLite consensus disorder prediction 831 851 - -
Lan2g1247 1106 Pfam Transcription factor BRX N-terminal domain 915 948 IPR027988 -
Lan2g1247 1106 Pfam Unstructured region between BRX_N and BRX domain 957 1026 - -
Lan2g1247 1106 Pfam FYVE zinc finger 654 720 IPR000306 GO:0046872
Lan2g1247 1106 SUPERFAMILY PH domain-like 19 127 - -
Lan2g1247 1106 MobiDBLite consensus disorder prediction 142 172 - -
Lan2g1247 1106 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 658 720 IPR017455 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 550 601 IPR000408 -
Lan2g1247 1106 Pfam Transcription factor regulating root and shoot growth via Pin3 1032 1087 IPR013591 -
Lan2g1247 1106 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 665 726 IPR013083 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 310 323 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 329 345 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 379 395 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 420 436 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 436 450 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 539 557 IPR000408 -
Lan2g1247 1106 PRINTS Chromosome condensation regulator RCC1 signature 597 618 IPR000408 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 434 485 IPR000408 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 327 378 IPR000408 -
Lan2g1247 1106 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 379 433 IPR000408 -
Lan2g1247 1106 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 420 430 IPR000408 -
Lan2g1247 1106 PANTHER INACTIVE PHOSPHOLIPASE C-LIKE PROTEIN 2 20 1092 - -
Lan2g1247 1106 Coils Coil 878 933 - -
Lan2g1247 1106 Pfam Pleckstrin homology domain 21 127 IPR001849 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1247 Lan-Chr2 23516000 23523843 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1247 924 1099 Major Intrinsic Protein MIP AT1G31880 32.979 1.38e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1247 - - gmx:100802464 1873.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1247 2 23516000 23523843 Lan2g1247 2 23516000 23523843 ECH
Lan2g1247 2 23516000 23523843 Lan11g0141 11 882789 891552 LSH
Lan2g1247 2 23516000 23523843 Lan9g1428 9 21165589 21174680 LSH