Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1246 ATGGAAGCATCAAATGAATTACAATCAGAAGAAAATAAATATATGGAGAAAAATAGGAAAAGAAAGCTCAAAACACCGGCCCAGGTTGCAGGATTGGAGAACTTTTATAATGAGCACAAATATCCCACAGAAGAAATGAAATTAGAAGTTGCTGAGGAGTTGGGGTTGACAGAAAAACAAGTATCTGGGTGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGCAGTTGCTAATGGGCGACAAGATCGTTCGAGTGGTGTCATCCAGGATCGTGGCAGTGGACTTGGGCAAGATTCATGTGGAAGCAGTAAACATGGTGATTATAAGTATCTGGATCCCAAAGAGGTTGAGAGCCAAGGTCTACACAATAATGGTTTTTCAGCTGCGGATATAGCCTACGGACATAGGAACCATTATACAGAAAACATCAGCGGAATGGAGGACACTTCATCCGAGAGTAGCTCATATTTGCAAGATAGGTTGTTTCCTCAAGGCCAGGATCCATATGATATGGAATCTTCGAGATATTTAACACCTAATAGAGCTCTTCCACCCCTAAATCCCAAGAGTGCAATTAACATGAGACATAAACCATCAGGATATCTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCCGTTAAGAAGCAATTTGGAAGGAGTTATCGAGAAGATGGTCCTCTACTTGGTGTAGAATTTGATCCACTTCCTCCAGGGGCATTTGAAGGCAAAAATGCGGATCCAGTTCATGAAACATATGGTGTTGCAAATCCTGTTCTTCCAAATTCTCCAGATATCTCCCCTGTAAAAAGGCAACCCGATCTTAGCTCTAGATATGATACGTATTATACTAAATTTAGTTCCCAAGATTCTCATATTGAAGGAGTTGACTTGGGTTCCTTGCATGACGGTTCTGGTTTCCAGGATAAACAAGATAAGAAAGCTCGGCAGAGTATAAAACAAAGGCAAACTTTTTACAGTAACAATCACTATCCTGGCAGGAACTCTTCCCTGGATCTGTATGAAGACGATAATGGAGAAGCATCTGCTTATCATAGCACTAAGAATCATAGAATGTTCATTACGCGTGGTGTTGAGGGAATGAGATCTGATTCTACTTCAAACCAGAGCGATCACTATGAAGAGAACCACATGATTAAACAAACAGACTTGCTGCCACATGGCTATGATAACTTCAATCTGAAGAATGTGCAAAGGAGTGGACATGTAAAATCTAAGCATTCAAATTCAGTCCGTAATTCTCAAATTCCTGTCGAAACTGAAGAAAGAGGGCTATCTACTAGGATGGCAAAGGAAGAGATGTTTAAGGGGGGCAAGAAGGCAAAGAAGAAACATCGCGATGCAGATGAAGCAAGGATGCTTTCAAAAGAAATCACAGATGCAAAGCGAACTAAAGTCGATCCACTTCATCAATACCATGTGAAACAAGCACCCATTGCTGAGATTGACCAAAGGAAAATTCAAAGATCTGCTGTTCCGATACCATCTAGCTTTAGCGAGGACGAAACTGCTGACACGAGTTCGTCACTGGGTTAA 1578 0.4081 MEASNELQSEENKYMEKNRKRKLKTPAQVAGLENFYNEHKYPTEEMKLEVAEELGLTEKQVSGWFCHRRLKDKRLLKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHGDYKYLDPKEVESQGLHNNGFSAADIAYGHRNHYTENISGMEDTSSESSSYLQDRLFPQGQDPYDMESSRYLTPNRALPPLNPKSAINMRHKPSGYLKVKGEIENAAITAVKKQFGRSYREDGPLLGVEFDPLPPGAFEGKNADPVHETYGVANPVLPNSPDISPVKRQPDLSSRYDTYYTKFSSQDSHIEGVDLGSLHDGSGFQDKQDKKARQSIKQRQTFYSNNHYPGRNSSLDLYEDDNGEASAYHSTKNHRMFITRGVEGMRSDSTSNQSDHYEENHMIKQTDLLPHGYDNFNLKNVQRSGHVKSKHSNSVRNSQIPVETEERGLSTRMAKEEMFKGGKKAKKKHRDADEARMLSKEITDAKRTKVDPLHQYHVKQAPIAEIDQRKIQRSAVPIPSSFSEDETADTSSSLG* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1246 525 MobiDBLite consensus disorder prediction 87 105 - -
Lan2g1246 525 Gene3D - 11 82 - -
Lan2g1246 525 SUPERFAMILY Homeodomain-like 12 79 IPR009057 -
Lan2g1246 525 CDD homeodomain 19 74 IPR001356 GO:0003677
Lan2g1246 525 MobiDBLite consensus disorder prediction 500 525 - -
Lan2g1246 525 MobiDBLite consensus disorder prediction 1 23 - -
Lan2g1246 525 Pfam Homeodomain 19 74 IPR001356 GO:0003677
Lan2g1246 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Lan2g1246 525 MobiDBLite consensus disorder prediction 504 525 - -
Lan2g1246 525 MobiDBLite consensus disorder prediction 81 111 - -
Lan2g1246 525 MobiDBLite consensus disorder prediction 1 26 - -
Lan2g1246 525 MobiDBLite consensus disorder prediction 421 435 - -
Lan2g1246 525 SMART HOX_1 17 79 IPR001356 GO:0003677
Lan2g1246 525 ProSiteProfiles 'Homeobox' domain profile. 15 75 IPR001356 GO:0003677
Lan2g1246 525 MobiDBLite consensus disorder prediction 415 441 - -
Lan2g1246 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1246 Lan-Chr2 23508385 23513171 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1246 16 523 Homeobox Transcription Factor Family AT4G03250 41.098 1.71e-82 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lan2g1246 Homeodomain 4.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1246 - - gmx:100803515 747.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1246 2 23508385 23513171 Lan2g1246 2 23508385 23513171 ECH
Lan2g1246 2 23508385 23513171 Lan11g0142 11 893664 898951 LSH
Lan2g1246 2 23508385 23513171 Lan9g1427 9 21158633 21162892 LSH