Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1244 ATGGGCATGGTTGGCCTCCGTGACCTCTTTGTTGTAACACCCGCTTCTACCTTCCACCACCACCATGAACAACCACATTACTCCGACCACCACCCTCCTCATCATTCCATCAATAGTAGTTCCAACCCCGCCACTGCACTCGGCGTTGGAATCGTCCCGCTCCTCGCTGCAACACCTTGTCTTGACAATGAAACTATGATGAGTAATAGAAATCGTGGGAGCAGCGGGGGAATTCAGGGAATTCAGTTTTGGCAAGATCAGCAACCTCACCATTACTTGAAAAACCACAACGTGAATGTTTGTCATGAAAATTATGTCCAGAGCGGTGGCAGCGGAGGTGGTGGCGGAATAACAGTTTCGGGAACAAATAGTGGTGGAACAACGACGTGTCAAGATTGTGGGAATCAAGCGAAGAAAGATTGTTGTAACCAAAGGTGTAGGACTTGTTGTAAGAGTAGAGGTTTTGATTGCCCTACGCACGTGAAGAGCACGTGGGTTCCCGCTGCACGCCGGAGAGAACGACAGCTTATGCAATCAGTTACTGGTGGTGGTGGTTGTTCTACTGCTTCAACTTCTGGTGCTAAGAAACCTAAACTTATTTCTTCACATACAACTAATTCCCATACTTCCACTTCTAACACCACCCCTCCTAGGAGTTTCGACACTAGTTCTAGTCATCAAGATGGTGGTATCAAGGAGCCGTTGCCTGGTCAGATTCGTGCACCTGCAGTTTTCAAGTGTGTTAAAGTGACGGCAGTGGAAGATGGAGATGATGAGTATGCTTATCAAGCTGTAGTAAGGATTGGTGGCCATGTGTTTAAAGGGTTTCTCTATGATCAAGGGGTTGAAAATAGAGATGTTTATCCCAATCTCTCGGAACTGCATTTGGGTGGTGGTAGTGGTGGAAATGGAAATGGTGGCGGTGGTTCAGGAAGAAATGGGGTTTCATCTTCATCCCCAATGATGGATCCTTCTGTTGTTTATGGTGGAGGGTTACTTGGAGGTTCAACCTATGGTAATCCAATAAATTGA 1032 0.4671 MGMVGLRDLFVVTPASTFHHHHEQPHYSDHHPPHHSINSSSNPATALGVGIVPLLAATPCLDNETMMSNRNRGSSGGIQGIQFWQDQQPHHYLKNHNVNVCHENYVQSGGSGGGGGITVSGTNSGGTTTCQDCGNQAKKDCCNQRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMQSVTGGGGCSTASTSGAKKPKLISSHTTNSHTSTSNTTPPRSFDTSSSHQDGGIKEPLPGQIRAPAVFKCVKVTAVEDGDDEYAYQAVVRIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGGNGNGGGGSGRNGVSSSSPMMDPSVVYGGGLLGGSTYGNPIN* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1244 343 MobiDBLite consensus disorder prediction 180 229 - -
Lan2g1244 343 MobiDBLite consensus disorder prediction 20 42 - -
Lan2g1244 343 MobiDBLite consensus disorder prediction 298 321 - -
Lan2g1244 343 Pfam Domain of unknown function (DUF702) 127 283 - -
Lan2g1244 343 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 235 282 IPR006511 -
Lan2g1244 343 MobiDBLite consensus disorder prediction 177 236 - -
Lan2g1244 343 MobiDBLite consensus disorder prediction 306 321 - -
Lan2g1244 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 343 - -
Lan2g1244 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 2 343 IPR007818 GO:0003700|GO:0006355
Lan2g1244 343 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 129 171 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1244 Lan-Chr2 23474648 23477262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1244 1 328 C2H2 Transcription Factor Family AT5G12330 51.176 2.54e-88 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lan2g1244 DUF702 8.7e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1244 - - lang:109357487 521.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1244 2 23474648 23477262 Lan2g1244 2 23474648 23477262 ECH
Lan2g1244 2 23474648 23477262 Lan9g1425 9 21132097 21133868 LSH