Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1236 ATGGGCAATTATTGCTCAGGTGGTGCCGATGACCCGGCCGACAATGCCGACAAGGGAGAAACCAATAATAACCAAGAAAACAGCAACAACAACAACAATGAAGACTCAGCCACCACCCCACCACCATCATCCAAACCATCGCCGCCATCATCTTCTACGAAGCCATCAAAACAAGCCCCTATTGGCCCTGTCCTTGAAAGACCAATGGAGGATGTGAAAGCTACCTACAACATAGGGAAGGAGCTAGGGAGAGGACAATTTGGTGTTACACATTTGTGCACACATAAGGTCACAGGAAAACAATATGCATGCAAAACCATTGCTAAGAGGAAACTTGTGAACAAAGAGGACCTAGAAGATGTTAGGAGGGAAGTACAAATCATGCATCACCTTATAGGGCAACCCAACATTGTAGAACTTGTCGGTGCCTTCGAGGACAAGCAATCTGTGAATTTGGTGATGGAGTTGTGTGCCGGTGGCGAGCTTTTCGATCGAATGATTGCAAAGGGACATTACACTGAACGCGGTGCTGCTTCATTGTTGAGAACCATTGTCCAAATTGTACATACTTGTCATTCAATGGGTGTCATTCATAGAGATCTTAAGCCTGAGAATTTCCTCTTGTTGAGTAAGGATGAGAATTCACCCCTCAAGGCAACAGATTTTGGTCTATCAGTTTTTTACAAGCAAGGAGAGGTGTTTAAAGACCTTGTTGGTAGTGCATATTACATTGCACCTGAGGTGTTGAAGAGAAAATATGGACCTGAAGTTGATATTTGGAGTGTTGGTGTAATACTATACATTCTTCTATGTGGTGTTCCTCCATTCTGGGCAGAATCCGAAACCGGGATATTCAATTCTATCCTAAGAGGTCACATTGACTTTACCAGCGACCCATGGCCCTCGATTTCACCTCAGGCAAAAGATCTTGTTAGGAAAATGTTGAATATGGATCCTAAGCAGAGGTTGACAGCATATGAAGTTCTGAATCATCCATGGATAAAGGAAGATGGAGAAGCACCAGATACACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAATTCAGGGCAATGGACCAATTCAAGAAAGTAGCTCTAAAGGTAATTGCTGGGTGCTTATCAGAGGAAGAAATCATGGGATTGAAGCAAATGTTCAAGGGAATGGACACTGACAACAGTGGAACCATTACAATTGAAGAGCTCAAGCAAGGACTTGCAAAACAAGGGACTAAGTTGACAGAACAAGAAGTTAAGCAATTAATGGAAGCTGCTGATGCAGATGGCAATGGACTCATAGATTATGATGAGTTCATCACAGCCACGATGCACATGAACCGAATGAACAGAGCAGACCATGTTTATACCGCATTCCAATACTTCGATAAAGATAACAGCGGGTACATCACCATTGAAGAACTAGAGCAAGCTCTCCATGAATATGACATGCATGATGGCAGGGACATCAAGGAAATCATTGCAGAAGTTGATGCAGATAATGATGGGCGAATTAACTATGACGAGTTTGTCGCAATGATGACGAAAGGACACGCCGAAGCAGTACCTACGAAGAAAAGGCGCGATTCATTTGTTTCATAG 1599 0.4328 MGNYCSGGADDPADNADKGETNNNQENSNNNNNEDSATTPPPSSKPSPPSSSTKPSKQAPIGPVLERPMEDVKATYNIGKELGRGQFGVTHLCTHKVTGKQYACKTIAKRKLVNKEDLEDVRREVQIMHHLIGQPNIVELVGAFEDKQSVNLVMELCAGGELFDRMIAKGHYTERGAASLLRTIVQIVHTCHSMGVIHRDLKPENFLLLSKDENSPLKATDFGLSVFYKQGEVFKDLVGSAYYIAPEVLKRKYGPEVDIWSVGVILYILLCGVPPFWAESETGIFNSILRGHIDFTSDPWPSISPQAKDLVRKMLNMDPKQRLTAYEVLNHPWIKEDGEAPDTPLDNAVLNRLKQFRAMDQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGTITIEELKQGLAKQGTKLTEQEVKQLMEAADADGNGLIDYDEFITATMHMNRMNRADHVYTAFQYFDKDNSGYITIEELEQALHEYDMHDGRDIKEIIAEVDADNDGRINYDEFVAMMTKGHAEAVPTKKRRDSFVS* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1236 532 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1236 532 PANTHER SERINE/THREONINE-PROTEIN KINASE 19 522 - -
Lan2g1236 532 ProSitePatterns EF-hand calcium-binding domain. 390 402 IPR018247 -
Lan2g1236 532 Gene3D Transferase(Phosphotransferase) domain 1 162 341 - -
Lan2g1236 532 MobiDBLite consensus disorder prediction 1 68 - -
Lan2g1236 532 ProSitePatterns Protein kinases ATP-binding region signature. 82 109 IPR017441 GO:0005524
Lan2g1236 532 PANTHER CALMODULIN-DOMAIN KINASE CDPK PROTEIN 19 522 - -
Lan2g1236 532 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1236 532 Gene3D - 342 519 - -
Lan2g1236 532 ProSiteProfiles EF-hand calcium-binding domain profile. 449 484 IPR002048 GO:0005509
Lan2g1236 532 Gene3D Phosphorylase Kinase; domain 1 78 161 - -
Lan2g1236 532 CDD STKc_CAMK 76 333 - -
Lan2g1236 532 ProSitePatterns EF-hand calcium-binding domain. 497 509 IPR018247 -
Lan2g1236 532 SUPERFAMILY EF-hand 374 514 IPR011992 -
Lan2g1236 532 ProSitePatterns EF-hand calcium-binding domain. 462 474 IPR018247 -
Lan2g1236 532 SMART efh_1 453 481 IPR002048 GO:0005509
Lan2g1236 532 SMART efh_1 381 409 IPR002048 GO:0005509
Lan2g1236 532 SMART efh_1 417 445 IPR002048 GO:0005509
Lan2g1236 532 SMART efh_1 488 516 IPR002048 GO:0005509
Lan2g1236 532 SUPERFAMILY Protein kinase-like (PK-like) 51 360 IPR011009 -
Lan2g1236 532 MobiDBLite consensus disorder prediction 18 40 - -
Lan2g1236 532 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1236 532 ProSiteProfiles EF-hand calcium-binding domain profile. 488 519 IPR002048 GO:0005509
Lan2g1236 532 ProSiteProfiles EF-hand calcium-binding domain profile. 413 448 IPR002048 GO:0005509
Lan2g1236 532 ProSiteProfiles EF-hand calcium-binding domain profile. 377 412 IPR002048 GO:0005509
Lan2g1236 532 Pfam EF-hand domain pair 382 442 IPR002048 GO:0005509
Lan2g1236 532 Pfam EF-hand domain pair 453 513 IPR002048 GO:0005509
Lan2g1236 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lan2g1236 532 ProSitePatterns EF-hand calcium-binding domain. 426 438 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1236 Lan-Chr2 23424851 23427619 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1236 1 530 EF-hand Containing Proteins AT5G12180 79.245 0.0 883
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lan2g1236 Pkinase 3.9e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1236 K13412 - gmx:100819061 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1236 2 23424851 23427619 Lan2g1236 2 23424851 23427619 ECH
Lan2g1236 2 23424851 23427619 Lan11g0149 11 947889 951473 LSH
Lan2g1236 2 23424851 23427619 Lan9g1418 9 21061501 21069867 LSH