Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan2g1228 | ATGTCAAGTGGAGCAACTCACTGGTGTTACGCGTGCAGGCAGCCAATTGTGCTCGAAGGGAGAGATGTCATCTGTCCCGACTGTGATGGAGGATTCGTACAAGAACTCAATGAGATGCAAGAAACTCCACTCCAATTTACTGTTCCGTCGCAATCAGGAGAGTCTAATCAAACGCCTGATCTTTTTGATGCTATACATGCTTTTATGGGGCGGAGGGGTTCTGATCCTAGATTTGGGCTTATAGATGTTGTTGATAATGTCATGAGGCGGAGAATGTCGGGAAGACACCCAAACTTTGATGTTAGAGGGAGGACTGGTTCTGTCCTAGCTCCTCCTGAACAGAGTTGGGGTGTTTTGAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGGTCCTGGGTTCACCTTGTCTAACGGTGGCTCAAGAGGTGGTCCCAGGCGTGTTGATTTTGGTGACTATTTTATGGGCCCTGGACTGGAAGAACTTATCGAACAACTCGCTCCGAATGATCGGCATGGTCCGCCCCCAGCTGCACGTTCTTCAATTGATGCAATGCCTACTATTAAGATCACACAGGCACATCTCCGCTCAGATTCACACTGTCCAGTTTGTAAAGACAAATTTGAACTCGGCTGTGAAGCCAGAGAGATGCCATGTAATCATATTTACCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCGTGCCCTGTTTGCCGTATTGAGCTGCCACCTCAAGGACATGTTTGTGCTCGTGGTAGTCGAAGCTTGGGAGGAAGGAATGCCAACAGCAACAGTGGCAATGATAGTAGCTCCAGTGGCAGGGAGAGTACCAATCAGAACCAAGGAAGAAGAAACCCGTTATCATTTTTGTGGCCATTCCGTTCTTCGACTTCAAACAATAATAATCATCATACTGAAACTAGGGGAAGCGGCTCTTCTTCAACCACTCCTGACCAGCATGATGGGACAAGTTACAGTGGATGGCCCTTTGATTACTAA | 1008 | 0.4702 | MSSGATHWCYACRQPIVLEGRDVICPDCDGGFVQELNEMQETPLQFTVPSQSGESNQTPDLFDAIHAFMGRRGSDPRFGLIDVVDNVMRRRMSGRHPNFDVRGRTGSVLAPPEQSWGVLSSGPYLIFHGQGPGFTLSNGGSRGGPRRVDFGDYFMGPGLEELIEQLAPNDRHGPPPAARSSIDAMPTIKITQAHLRSDSHCPVCKDKFELGCEAREMPCNHIYHSDCIVPWLVQHNSCPVCRIELPPQGHVCARGSRSLGGRNANSNSGNDSSSSGRESTNQNQGRRNPLSFLWPFRSSTSNNNNHHTETRGSGSSSTTPDQHDGTSYSGWPFDY* | 336 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan2g1228 | 335 | SMART | ring_2 | 201 | 241 | IPR001841 | - | |
Lan2g1228 | 335 | CDD | RING-H2_RNF126_like | 201 | 242 | - | - | |
Lan2g1228 | 335 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 317 | - | - | |
Lan2g1228 | 335 | ProSiteProfiles | Zinc finger RING-type profile. | 201 | 242 | IPR001841 | - | |
Lan2g1228 | 335 | Pfam | zinc-ribbon | 6 | 36 | IPR039525 | GO:0061630 | |
Lan2g1228 | 335 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 165 | 248 | IPR013083 | - | |
Lan2g1228 | 335 | SUPERFAMILY | RING/U-box | 181 | 248 | - | - | |
Lan2g1228 | 335 | MobiDBLite | consensus disorder prediction | 256 | 335 | - | - | |
Lan2g1228 | 335 | PANTHER | OS03G0351800 PROTEIN | 1 | 317 | - | - | |
Lan2g1228 | 335 | Pfam | Ring finger domain | 200 | 242 | IPR001841 | - | |
Lan2g1228 | 335 | MobiDBLite | consensus disorder prediction | 259 | 326 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan2g1228 | Lan-Chr2 | 23371235 | 23373602 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan2g1228 | 145 | 278 | C3H Transcription Factor Family | AT5G01980 | 40.441 | 2.34e-26 | 107 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan2g1228 | K11982 | - | gmx:100813674 | 507.679 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan2g1228 | 2 | 23371235 | 23373602 | Lan11g0165 | 11 | 1055161 | 1057542 | LSH |