Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1227 ATGGCTGTCACCTTCTCAGATCTACACACTGAATCCGGCCTCAAATCTCTTGATGAATTCCTCTCTGGAAAAACCTATATTTCTGGGGATGAATTGACAAAGGATGACATAAAAGTGTATGCTTCTGTTTTGGAGAAGCCATCAGATTCATTCACCCATGCTGCCACGTGGTACGATGTTGTCTCTTCTCATCTTGCTCTAAGATTCCCTGGTACTGCTCAAGGGGTGAAATTCAGTGTCAAATCTGCTCCAGCTGAAGTTGCTGCACCTGCTAAAGTGGATGCTCCAGCAGCCGATGACGATGATGATCTAGATCTCTTTGGTGATGAAACAGAGGAAGAGAAGAAGGCAGCAGAGGAAAGGGAGGCTGCTAAGAAGCCGGCCAAAAAGAAAGAAAGTGGTAAGTCTTCTGTTCTGCTTGATGTGAAACCTTGGGATGATGAGACAGACATGAAGAAGCTAGAAGAGACTGTTCGCAGCATCGAGTTGCCTGGTCTATTGTGGGGAGCATCTAAACTGGTTGCTGTTGGATATGGGATCAAGAAGCTGCAGATCATGATGACAATTGTTGATGACCTTGTATCCGTGGACACTCTCATCGAGGAACGTCTCACAGTTGAGCCATGCAACGAGTACATCCAGAGCTGTGACATCGTCGCGTTCAACAAAATCTAA 675 0.4593 MAVTFSDLHTESGLKSLDEFLSGKTYISGDELTKDDIKVYASVLEKPSDSFTHAATWYDVVSSHLALRFPGTAQGVKFSVKSAPAEVAAPAKVDAPAADDDDDLDLFGDETEEEKKAAEEREAAKKPAKKKESGKSSVLLDVKPWDDETDMKKLEETVRSIELPGLLWGASKLVAVGYGIKKLQIMMTIVDDLVSVDTLIEERLTVEPCNEYIQSCDIVAFNKI* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1227 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 100 108 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan2g1227 224 SUPERFAMILY GST C-terminal domain-like 10 66 IPR036282 -
Lan2g1227 224 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 213 224 IPR001326 GO:0003746|GO:0005853|GO:0006414
Lan2g1227 224 Gene3D - 128 224 IPR014717 -
Lan2g1227 224 SMART EF1_GNE_2 135 224 IPR014038 GO:0003746|GO:0006414
Lan2g1227 224 PANTHER TRANSLATION ELONGATION FACTOR EF1B/RIBOSOMAL PROTEIN S6-RELATED 1 224 - -
Lan2g1227 224 CDD EF1B 133 224 IPR014038 GO:0003746|GO:0006414
Lan2g1227 224 Pfam EF-1 guanine nucleotide exchange domain 137 224 IPR014038 GO:0003746|GO:0006414
Lan2g1227 224 SUPERFAMILY eEF-1beta-like 132 224 IPR036219 -
Lan2g1227 224 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 1 224 - -
Lan2g1227 224 MobiDBLite consensus disorder prediction 111 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1227 Lan-Chr2 23366283 23385032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1227 1 224 Eukaryotic Initiation Factors Gene Family AT5G12110 71.616 8.51e-102 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1227 K03232 - gmx:100500082 316.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1227 2 23366283 23385032 Lan9g1410 9 21025797 21027931 LSH
Lan4g1100 4 16637155 16639715 Lan2g1227 2 23366283 23385032 PCT
Lan2g1227 2 23366283 23385032 Lan4g1100 4 16637155 16639715 PCT