Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1226 ATGTCAAAGGAAAAAGTAAATAGAGGGATTTGGAAACCATATGAAGAAGAAATTTTGATAGCACATGTTATCGAGCATGGGCTGAAAAATATAAAAAATGTAACAGGACTCGACCGTTCCGAAAGAAGCTGCAAGCGTCGATGGAATAAGCAGCTTAAGCAACGTATGAATTTGGATCCATTTACTCCAGAGGAAGTGGCTAAAATCATTGAACTCCATGCTAAACTTGGTAACAATTTGACTCAAATTGCAGAAGAGATTCCTGGACGATCCTTCGAGGATATAAGAAATTTATGCAGATCCCTCGATTTTCAAATAAAACTAACTCTAAGCAGCCAGCAACAAGTTTATGTCTCACAAGCTGCATCCAATCCTGACACAACTGGACAAAGTAGCATTCCTCAGGTTCCTTCACCAACAAGCATAACAAGTCAACAAGGTAGCAACAACAGTGGTGTTTCTGGTGATGCTTCCATGCTTTCATTGAATGAGCAAGTGGATTCATATTCAACAGATGAAGATAGTTTATATGGAGCTGCGAAGAGATTTCTCAAGTAA 558 0.3889 MSKEKVNRGIWKPYEEEILIAHVIEHGLKNIKNVTGLDRSERSCKRRWNKQLKQRMNLDPFTPEEVAKIIELHAKLGNNLTQIAEEIPGRSFEDIRNLCRSLDFQIKLTLSSQQQVYVSQAASNPDTTGQSSIPQVPSPTSITSQQGSNNSGVSGDASMLSLNEQVDSYSTDEDSLYGAAKRFLK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1226 185 ProSiteProfiles Myb-like domain profile. 3 52 IPR001005 -
Lan2g1226 185 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 3 134 - -
Lan2g1226 185 Gene3D - 5 58 - -
Lan2g1226 185 Pfam Myb-like DNA-binding domain 60 97 IPR001005 -
Lan2g1226 185 SUPERFAMILY Homeodomain-like 6 97 IPR009057 -
Lan2g1226 185 MobiDBLite consensus disorder prediction 120 159 - -
Lan2g1226 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 56 IPR017930 -
Lan2g1226 185 SMART sant 57 105 IPR001005 -
Lan2g1226 185 SMART sant 7 54 IPR001005 -
Lan2g1226 185 Gene3D - 59 104 - -
Lan2g1226 185 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 106 IPR017930 -
Lan2g1226 185 CDD SANT 60 97 IPR001005 -
Lan2g1226 185 CDD SANT 11 50 IPR001005 -
Lan2g1226 185 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 3 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1226 Lan-Chr2 23364069 23365079 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1226 3 101 MYB Transcription Factor Family AT1G09540 40.196 8.95e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan2g1226 Myb_DNA-binding 1.2e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1226 K09422 - qsu:111998669 86.2705