Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1222 ATGAGTCAGCCTAAGATTAAGCGCCGAGTTGGTAAATACGAGGTAGGGAGGACCATTGGTGAGGGAACATTTGCAAAGGTGAAATTTGCGAGGAACTCTGAGACAGGGGAGCCTGTGGCTCTCAAAATTCTTGACAAAGAGAAAGTTCTCAAGCACAAGATGGCTGAGCAGATCAGAAGGGAAATAGCTACTATGAAGTTAATCAAGCATCCAAATGTTGTTCAGCTATATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTCTGGAGTTTGTGACTGGGGGAGAGCTCTTTGACAAAATTGTAAATCATGGACGGATGAGTGAAAATGAAGCACGTAGATATTTCCAACAGCTTATAAATGCTGTTGATTATTGCCATAGCCGAGGAGTCTACCACAGAGACCTAAAGCCAGAGAATCTGCTATTAGATACTTACGGGAACCTTAAAGTTTCCGACTTTGGGTTAAGTGCTCTCTCTCAACAAGTTAGGGATGATGGACTTCTCCATACTACATGTGGAACTCCAAATTATGTTGCTCCCGAGGTTCTTAATGATAGAGGCTATGACGGGGTAACTGCAGATTTATGGTCATGCGGGGTGATTCTCTTTGTACTGGTTGCAGGTTACTTGCCTTTCGATGATCCTAACCTTATGAACTTGTATAAAAAAATTTCAGGTGCTGAATTCACTTGCCCCCCATGGCTTTCTTTCAGTGCTAGGAAATTCATATCTCGAATCTTGGATCCCAATCCTGTGACTCGTATCACTATAGCTGAGATATTGAGTGATGAATGGTTTAAGGTAGATTATAAGCCCCCAGTTTTCATCGAGAAAGCGGAAACCAGCCTGGATGATGTAGAAGCTGTCTTTAAAGATTGCGAAAATCACCATGTGACAGAGAAGAAGGAACAGCAACCAACATCCATGAATGCTTTCAAGTTAATTTCCATGTCCAAAGGGCTAAACCTTGAAAACTTGTTTGAAGATCAGGGATTTAAAAGGGAAACAAGATTCACATCAAAATCCTCTGCCAATGAGATAATCAACAAGATTGAAGAAGCTGCAAAACCTCTTGGATTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTAGCAAATGTCAAAGCTGGAAGGAAGGGAAACCTTAATGTTTCCACAGAGATATTTCAAGTCGCACCCTCTCTTCATATGGTTGAGGTACGGAAAGCAAGAGGCGATACATTGGAGTTTCATAAGTTCTACAAGAATCTTTCAACATGCCTAGAGGATGTTGTTTGGAAAACAGAAGATGATATGCAAACACAAGAAACAAAGTGA 1323 0.4089 MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREIATMKLIKHPNVVQLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGVTADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISGAEFTCPPWLSFSARKFISRILDPNPVTRITIAEILSDEWFKVDYKPPVFIEKAETSLDDVEAVFKDCENHHVTEKKEQQPTSMNAFKLISMSKGLNLENLFEDQGFKRETRFTSKSSANEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVSTEIFQVAPSLHMVEVRKARGDTLEFHKFYKNLSTCLEDVVWKTEDDMQTQETK* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1222 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lan2g1222 440 SMART serkin_6 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1222 440 Pfam Protein kinase domain 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1222 440 Gene3D Transferase(Phosphotransferase) domain 1 93 274 - -
Lan2g1222 440 PANTHER - 2 431 - -
Lan2g1222 440 Pfam NAF domain 308 366 IPR004041 GO:0007165
Lan2g1222 440 Coils Coil 278 298 - -
Lan2g1222 440 ProSiteProfiles NAF domain profile. 306 330 IPR018451 GO:0007165
Lan2g1222 440 CDD CIPK_C 312 420 - -
Lan2g1222 440 Gene3D Phosphorylase Kinase; domain 1 4 92 - -
Lan2g1222 440 Gene3D Kinase associated domain 1, KA1 305 429 - -
Lan2g1222 440 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Lan2g1222 440 SUPERFAMILY Protein kinase-like (PK-like) 9 308 IPR011009 -
Lan2g1222 440 CDD STKc_SnRK3 12 267 - -
Lan2g1222 440 ProSiteProfiles Protein kinase domain profile. 13 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan2g1222 440 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 3 2 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1222 Lan-Chr2 23329349 23335122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1222 5 410 CBL-interacting serine-threonine protein kinases AT2G26980 79.115 0.0 684
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Lan2g1222 Pkinase 8.6e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1222 - - gmx:100794566 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1222 2 23329349 23335122 Lan11g0167 11 1068829 1074606 LSH
Lan2g1222 2 23329349 23335122 Lan9g1405 9 21005055 21010347 LSH