Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1216 ATGGCCAAGAAGCGAAAGCTCCGATCCTCCGATCCCGAACCTGAACCCCAGGATATACAGGAACATCAAACCCTAGAAGATGCCCAGGACCACGTGCCCGTGGAAGAGGAAAACCCAGAGGTAGAAGAAGGAGGAGATGATGAAGATGAAATATTGGAAGAGAAGGAACATGATGCTGAACCTTCAAACGATGCTGTTGCTGCTGCATCTGAATCGACTAAGGTTGAAGTGAACGGTGACAACAACAACGAAGAGGAAGAAGAAGAAGAAGACCTTGATTTGGAAGATGAACCTGTTGAGAAGCTTCTAGAACCTTTCACTAAGGAGCAACTACACGCGCTCGTGAAGCAAGCCGTTGAGAAGTTCCCTGATTTCGTTGAGAACGTTCGCCAGCTGGCAGATGTGGACCCCGCACACCGCAAAATCTTCATCCACGGCCTAGGTTGGGACTCTACAGCCGAAACACTAACCTCCGTCTTCTCGAAATACGGCGAAATCGAAGACTGTAAGGCTGTTACTGATAAGCTTTCTGGGAAATCTAAAGGCTATGCTTTTATCCTTTTCAAGCATCGTAGTGGGGCCCGCAGAGCGCTGAAGCAGCCACAGAAGGAGATTGGTAACCGAACCACTTCGTGTCAATTGGCTTCTGCTGGACCTGTTCCGGCGCCACCGCCTGTGGCTCCTGCGGTTTCCGAGTATACTCAGAGGAAGATTTTTGTGAGCAATGTGAGTGCTGATATTGATCCCCAGAAGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGTCTTGATAGGCAGACTGGGAAGCCGAAAGGTTTTGCGCTTTTCGTGTATAAATCGGTTGATAGTGCGAAGAAGGCTCTTGAAGATCCCCACAAGCAGTTTGAGGGGCATGTTTTGTATTGCCAAAAGGCTGTTGATGGACCTAAGGGGAAACAGGGTTATCATCAGCAACCACATCACCAACACCAACACCATCAGCATCAGCATCAGCATCATAACCAACATCATCACCAGCCTCACTATCAAAGGAAGGACAAGAACAGGTATACTTCTGGTGGGCCACCACATGGTGGTGGTGGGCACTTGATGGCACCATCAGGTCCTGCTGTAGGAGGTTATAATCCGGGAGTGGCTGCGGCTCAGGGGTTGAATCCAGTGCTTGGGCAGGCGATATCGGCTTTGCTCACAACCCAAGGAGCTGGGTTGGGACTTGGGAATCTGCTTGGAGGTTTTGCTGGTGCACCTGTGAATCAGCCTGTTCCACAAGCTGGGTATGGTAATCAGCCTGCTATGAACTATGGGAACCAGCCGGGGATGCAGCAGGGATACCAGAATCCTCAAATGGGGCAGAACAGTGGTGTTAGGCCTCACCCTGGTGCTGGTGCCCCTTACATGGGTCATTAG 1425 0.506 MAKKRKLRSSDPEPEPQDIQEHQTLEDAQDHVPVEEENPEVEEGGDDEDEILEEKEHDAEPSNDAVAAASESTKVEVNGDNNNEEEEEEEDLDLEDEPVEKLLEPFTKEQLHALVKQAVEKFPDFVENVRQLADVDPAHRKIFIHGLGWDSTAETLTSVFSKYGEIEDCKAVTDKLSGKSKGYAFILFKHRSGARRALKQPQKEIGNRTTSCQLASAGPVPAPPPVAPAVSEYTQRKIFVSNVSADIDPQKLLEFFKQFGEVEDGPLGLDRQTGKPKGFALFVYKSVDSAKKALEDPHKQFEGHVLYCQKAVDGPKGKQGYHQQPHHQHQHHQHQHQHHNQHHHQPHYQRKDKNRYTSGGPPHGGGGHLMAPSGPAVGGYNPGVAAAQGLNPVLGQAISALLTTQGAGLGLGNLLGGFAGAPVNQPVPQAGYGNQPAMNYGNQPGMQQGYQNPQMGQNSGVRPHPGAGAPYMGH* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1216 474 MobiDBLite consensus disorder prediction 312 374 - -
Lan2g1216 474 MobiDBLite consensus disorder prediction 1 35 - -
Lan2g1216 474 SUPERFAMILY RNA-binding domain, RBD 128 217 IPR035979 GO:0003676
Lan2g1216 474 SUPERFAMILY RNA-binding domain, RBD 220 329 IPR035979 GO:0003676
Lan2g1216 474 MobiDBLite consensus disorder prediction 81 95 - -
Lan2g1216 474 MobiDBLite consensus disorder prediction 322 350 - -
Lan2g1216 474 MobiDBLite consensus disorder prediction 36 55 - -
Lan2g1216 474 CDD RRM_RBM24_RBM38_like 236 311 - -
Lan2g1216 474 Gene3D - 227 367 IPR012677 -
Lan2g1216 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 217 IPR000504 GO:0003723
Lan2g1216 474 MobiDBLite consensus disorder prediction 1 95 - -
Lan2g1216 474 CDD RRM_RBM24_RBM38_like 140 215 - -
Lan2g1216 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 209 IPR000504 GO:0003723
Lan2g1216 474 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 238 306 IPR000504 GO:0003723
Lan2g1216 474 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 30 461 - -
Lan2g1216 474 MobiDBLite consensus disorder prediction 443 459 - -
Lan2g1216 474 Gene3D - 25 222 IPR012677 -
Lan2g1216 474 SMART rrm1_1 237 309 IPR000504 GO:0003723
Lan2g1216 474 SMART rrm1_1 141 213 IPR000504 GO:0003723
Lan2g1216 474 MobiDBLite consensus disorder prediction 443 474 - -
Lan2g1216 474 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 30 461 - -
Lan2g1216 474 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 236 319 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1216 Lan-Chr2 23297443 23301495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1216 215 323 C2H2 Transcription Factor Family AT2G19380 29.358 2.32e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1216 K12741 - gmx:100792637 588.571
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1216 2 23297443 23301495 Lan11g0170 11 1086613 1090773 LSH
Lan2g1216 2 23297443 23301495 Lan9g1401 9 20990697 20993523 LSH