Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1191 ATGATAGGGTTTGAAGGGAACAGTTGCAGTGAGTTTTCTTCAATGGACATGATGAACATTGAAACTAATAGGAGGAAGTTTCTTTCTATGCCTCTGAGCAACAACAACAACAGCTCTGGTACTCAAGGTCATAACTACAACCAGCATCAGAATCACACCAACAACAACAACAACAGTTGCAGTAGTAGTAGTAGTAGTGTGAGGGATAAAATCATGGCACATCCTCTCTTTCCTCGTTTGTTGTCATCTTACATCAATTGTCTTAAGGTTGGAGCACCTCCTGAAGTGGTGGCTAGGTTAGAGGAGATATGTGCCAAATGTGATGAATCATCACATTACAGGACAGGAAATGGTTCCACAGGTGAAGATCCATCACTGGACCAGTTCATGGAGGCATACTGTGAGATGCTTATCAAGTATGAACAAGAGCTCTCAAAACCCTTCAAAGAAGCCATGCTTTTCTTTTCATCAGTTGAATGTCAACTTAAGGCTCTAGCAGTTTCAACAACAGACTTTGGTGAAAGTGGACCATCTTCACAAAATAGGGCTGATATTGTTCATGAACACAACATGAATACACAAGCTGAAGAGAGAGAACTAAAAGTGCAGCTTCTGCAAAAGTATAGTGGATACTTGGGTGGTCTGAAGAAGGAATTTATGAAGAAGAAAAAGAATGGAAAGTTACCAAAGGAAGCTAGGCAGCAGCTACTAGAATGGTGGAACAGACATTACAAATGGCCTTATCCATCGGAATCTCAGAAACAGGCACTTGCAGAATCCACAGGCCTAGATCTAAAGCAGATAAACAATTGGTTCATCAATAGAAGAAAACGTCATTGGAAGCCTTCAGAGGACATGCAATATGCTGTAATGGATGCAACAAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGCCATGCCTATGCTTCTGTAA 948 0.4082 MIGFEGNSCSEFSSMDMMNIETNRRKFLSMPLSNNNNSSGTQGHNYNQHQNHTNNNNNSCSSSSSSVRDKIMAHPLFPRLLSSYINCLKVGAPPEVVARLEEICAKCDESSHYRTGNGSTGEDPSLDQFMEAYCEMLIKYEQELSKPFKEAMLFFSSVECQLKALAVSTTDFGESGPSSQNRADIVHEHNMNTQAEERELKVQLLQKYSGYLGGLKKEFMKKKKNGKLPKEARQQLLEWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINRRKRHWKPSEDMQYAVMDATNYYMENVMCKPFPMDAMPMLL* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1191 315 Pfam KNOX1 domain 67 107 IPR005540 GO:0003677|GO:0005634
Lan2g1191 315 PANTHER HOMEOBOX KNOTTED-LIKE PROTEIN 1 306 - -
Lan2g1191 315 Gene3D - 217 294 - -
Lan2g1191 315 SMART KNOX1_2 65 109 IPR005540 GO:0003677|GO:0005634
Lan2g1191 315 MobiDBLite consensus disorder prediction 29 65 - -
Lan2g1191 315 Pfam ELK domain 199 220 IPR005539 GO:0003677
Lan2g1191 315 ProSiteProfiles ELK domain profile. 199 219 IPR005539 GO:0003677
Lan2g1191 315 SMART HOX_1 221 286 IPR001356 GO:0003677
Lan2g1191 315 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 306 - -
Lan2g1191 315 SMART ELK_2 199 220 IPR005539 GO:0003677
Lan2g1191 315 Pfam Homeobox KN domain 239 278 IPR008422 GO:0003677|GO:0006355
Lan2g1191 315 ProSiteProfiles 'Homeobox' domain profile. 219 282 IPR001356 GO:0003677
Lan2g1191 315 CDD homeodomain 231 283 IPR001356 GO:0003677
Lan2g1191 315 SMART KNOX2_2 116 167 IPR005541 GO:0003677|GO:0005634
Lan2g1191 315 ProSitePatterns 'Homeobox' domain signature. 257 280 IPR017970 GO:0000981|GO:0006355
Lan2g1191 315 SUPERFAMILY Homeodomain-like 221 293 IPR009057 -
Lan2g1191 315 Pfam KNOX2 domain 120 165 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1191 Lan-Chr2 23062556 23067185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1191 67 309 Homeobox Transcription Factor Family AT1G62360 65.882 3.67e-106 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan2g1191 KNOX2 2.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1191 - - gmx:100791704 473.781