Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1181 ATGCCAGAAAACAGGGAACCTCTCAGGAATGCTGCTTCTAATCACTCCGAAGCCATCGGACGTTTGAAAATCAATGGTAATCGGGATATAGATGCTGCTGCTCAATCTACCCCACTTCCAGAACGACCTGGTGAACCTGATTGCTTATATTATTTGAGGACTGGAATGTGCAGTTACAGGGGTAACTGCCGCTATAACCATCCTGCTAATGTTTTGCTGGGTACTCATTATGGTGAAGAACTCCCTGAGAGAATTGGTGAACCTGATTGTGAGTATTTTCTTAAGACGGGGACATGCAAGTATGGTTCCACATGTAAATATCATCATCCAAAAGATAGGAAAGGTGCTGCTCCTATATCATTTAACTCTCTAGGTCTTCCGATGCGTCAGGAAGAAAAATCATGCCCATATTACATGAGAACTGGTTCTTGTAAGTTTGGACTCGCATGCAAGTTTCATCATCCACAGATTGGAGTTTCCCCCGTGGCTGGATCTCCTACCTCGGCAATTCTTCCTGCATCTGGTTTACCATATGTTGGTGGGTTTTCCGGATGGCAATTACCAAGAATGTCATATTTATCTGGGCAGGGCATTCAATGTTATGTGCCTCCTTTTCTGTCTTCTCCACAAGGCATTATACCTGCACAGAACTGGAATACCTATATGGGAAGTACGAGCTCTACTATGTCTACCGCTTTTCTTGGATCTAATTTTGTTTACGACTCCATTAATCTGGGTGGATCACTTCTTGGTGGTCAAATAATAAGTCCAACGCTCCCAGAGAGACTTGATCAACCAGAATGTAAATACTTTATGAGCACCGGTAGCTGCAAATATGGATTTGATTGCAAGTTTCACCATCCAAAAGAAAGAATTGCTCAATCATTCATGAACCCACTTGGTCTTCCTGTCAGACCTGGGCATGCGATTTGTTCTTATTACAGACTCTATGGAATATGCAAGTTTGGCCCAACATGCAAATTTGATCATCCAGTTTTGACAACCCCTCAGAATTATGGCATGACGACATCACCTACTTCTCCTGTAATTGATACATCTCTAATTAGTAGTCCAATGGGTTTGTCTACTGTCCAACTGGCTGAGACATCTCCATCTAAATTATCAACAACTGACAAGCTTCAACACTCCGATACAAAAGCTGCCGAAGATTCATCCGAATAA 1182 0.4247 MPENREPLRNAASNHSEAIGRLKINGNRDIDAAAQSTPLPERPGEPDCLYYLRTGMCSYRGNCRYNHPANVLLGTHYGEELPERIGEPDCEYFLKTGTCKYGSTCKYHHPKDRKGAAPISFNSLGLPMRQEEKSCPYYMRTGSCKFGLACKFHHPQIGVSPVAGSPTSAILPASGLPYVGGFSGWQLPRMSYLSGQGIQCYVPPFLSSPQGIIPAQNWNTYMGSTSSTMSTAFLGSNFVYDSINLGGSLLGGQIISPTLPERLDQPECKYFMSTGSCKYGFDCKFHHPKERIAQSFMNPLGLPVRPGHAICSYYRLYGICKFGPTCKFDHPVLTTPQNYGMTTSPTSPVIDTSLISSPMGLSTVQLAETSPSKLSTTDKLQHSDTKAAEDSSE* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1181 393 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Lan2g1181 393 SUPERFAMILY CCCH zinc finger 264 291 IPR036855 GO:0046872
Lan2g1181 393 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Lan2g1181 393 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Lan2g1181 393 SMART c3hfinal6 84 111 IPR000571 GO:0046872
Lan2g1181 393 SMART c3hfinal6 131 156 IPR000571 GO:0046872
Lan2g1181 393 SMART c3hfinal6 42 69 IPR000571 GO:0046872
Lan2g1181 393 Gene3D - 261 344 - -
Lan2g1181 393 Gene3D - 40 120 - -
Lan2g1181 393 ProSiteProfiles Zinc finger C3H1-type profile. 84 112 IPR000571 GO:0046872
Lan2g1181 393 MobiDBLite consensus disorder prediction 379 393 - -
Lan2g1181 393 SUPERFAMILY CCCH zinc finger 307 332 IPR036855 GO:0046872
Lan2g1181 393 ProSiteProfiles Zinc finger C3H1-type profile. 42 70 IPR000571 GO:0046872
Lan2g1181 393 ProSiteProfiles Zinc finger C3H1-type profile. 262 290 IPR000571 GO:0046872
Lan2g1181 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 331 IPR000571 GO:0046872
Lan2g1181 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 265 289 IPR000571 GO:0046872
Lan2g1181 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 44 68 IPR000571 GO:0046872
Lan2g1181 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 156 IPR000571 GO:0046872
Lan2g1181 393 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 87 111 IPR000571 GO:0046872
Lan2g1181 393 MobiDBLite consensus disorder prediction 366 393 - -
Lan2g1181 393 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 26 9 386 - -
Lan2g1181 393 SUPERFAMILY CCCH zinc finger 89 112 IPR036855 GO:0046872
Lan2g1181 393 SUPERFAMILY CCCH zinc finger 47 70 IPR036855 GO:0046872
Lan2g1181 393 SUPERFAMILY CCCH zinc finger 128 156 IPR036855 GO:0046872
Lan2g1181 393 Gene3D - 121 161 - -
Lan2g1181 393 ProSiteProfiles Zinc finger C3H1-type profile. 129 157 IPR000571 GO:0046872
Lan2g1181 393 PANTHER PROTEIN PHOSPHATASE RELATED 9 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1181 Lan-Chr2 22958500 22962419 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1181 17 393 C3H Transcription Factor Family AT1G04990 45.663 6.60e-106 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g1181 zf-CCCH 2.2e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1181 - - vra:106765262 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1181 2 22958500 22962419 Lan11g0205 11 1310691 1314688 LSH
Lan2g1181 2 22958500 22962419 Lan9g1370 9 20773582 20777690 LSH