Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1180 ATGCCCCCATTCATAAACTCAGATCCAACACCACCAAACGACGCCGTTCCAACCCAACCCCGATTCCGCGGCGTCAGGAAGCGACCATGGGGCCGATTCGCCGCCGAGATCAGAGATCCATGGAAGAAAGCGCGCGTCTGGTTAGGAACCTTCGATTCCGCCGAAGACGCTGCTAGAGCCTACGATGCAGCCGCTTTATCCTTCCGAGGACCCAAAGCCAAGACCAATTTTCCTTTCTCTTCCTCAAACCCTACCCAAATCGCGATCTGTAATCGCGATTTTGATAACCGTCGCGGTGGCCGGTTCGCTGAAGCGGTGAACCGGCCAACCAGCAGCGGCATGAGCAGCACGGTTGAATCGTTCAGTGGACCTAGGGTTCCGTCCTCATCGATCGTGATTCATAACCGGAGACGTGTGGATCCGGTCGCCGGCGATGATTGTCATAGCGATTGTGATTCTTCGTCTTCGGTGATTGATGATGAGGATTGCGTGCTTACTTCGTCGTTCCGGAAAACACTGACTTTCGATCTCAACCTCCCGCCACCGGAGGATGACAATGGCGGCGGCGATTTCACCACCGATGAGCTTCTTGTAACCGCCTTGTGCCTCTGA 612 0.5523 MPPFINSDPTPPNDAVPTQPRFRGVRKRPWGRFAAEIRDPWKKARVWLGTFDSAEDAARAYDAAALSFRGPKAKTNFPFSSSNPTQIAICNRDFDNRRGGRFAEAVNRPTSSGMSSTVESFSGPRVPSSSIVIHNRRRVDPVAGDDCHSDCDSSSSVIDDEDCVLTSSFRKTLTFDLNLPPPEDDNGGGDFTTDELLVTALCL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1180 203 Pfam AP2 domain 20 70 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 19 176 - -
Lan2g1180 203 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3 19 176 - -
Lan2g1180 203 MobiDBLite consensus disorder prediction 1 16 - -
Lan2g1180 203 MobiDBLite consensus disorder prediction 106 126 - -
Lan2g1180 203 ProSiteProfiles AP2/ERF domain profile. 21 78 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 MobiDBLite consensus disorder prediction 1 24 - -
Lan2g1180 203 SMART rav1_2 21 84 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 CDD AP2 20 78 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 PRINTS Ethylene responsive element binding protein signature 44 60 IPR001471 GO:0003700|GO:0006355
Lan2g1180 203 Gene3D AP2/ERF domain 21 80 IPR036955 GO:0003700|GO:0006355
Lan2g1180 203 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Lan2g1180 203 MobiDBLite consensus disorder prediction 108 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1180 Lan-Chr2 22955482 22956719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1180 21 181 AP2-EREBP Transcription Factor Family AT1G50640 58.101 5.92e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan2g1180 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1180 K09286 - thj:104815435 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1180 2 22955482 22956719 Lan9g1369 9 20768817 20770040 LSH