Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1173 ATGAGGAAAAGAGAAAGGGAAAACCCTTGTGCAGTGTGTGGGCACTATCACAAATACGAGGAAGGCGAAGTGTGTTCAATTTGCGGCCACCGGTTAACGGTTGGTGAGAAAACTCCGGTGCAAATTAGCGCCTTCCCGTCGGTGATATTGCCGGAGTTTCTTTACCTCGGAAGCTACGACAACGCTTCGCGCTCGGAGCTTCTGAAGACTCAGGGAATCACTCGTATCCTCAATACTGTTCCTTCTTGTCAAAATCTCTACAAGAACTCATTTACCTATCACTGCCTCCCAGATGACAAAACTTTGCCATTTGATGAAGGAATTCAATTTTTAGAGCAGTGCGAGAAGGATAAGGCTCGTGTGTTGGTTCATTGCATGTCAGGAAAGAATAGGTCTCCGGCTATTGTAATTGCGTACTTGATGAAGTCCAGAGGATGGAGACTTGCACAGAGCTATCAGTGGGTGAAGGAACGAAGACCGTCTGTTGAATTAACTGAAGGTAGTTACCAGCAACTGAGGGAGTTAGAGCACAAGATCTTTGTATCAAATGTTGGTGGAAGCTCTGTGCTGCCCGGTTTTCCACCTGCAAGCTCAATTAGCTTTGGCTTCCCAAAGATCCATGACTCACCTTCACTTCCTCCCTTCAGCGGTGCCGGAACTACTTCAATTTTCGCCCAACCACCCCTAGACATTGCTCCAACTGCATTTACATTTGGAGCTGGTCAGATGCCGAATAGCGCGACCGGAAGCCCATTTAGTTCTAATCCACCTAATCCAAATGGTACTGATATTCAAATGGATGGTTCTTGA 810 0.4667 MRKRERENPCAVCGHYHKYEEGEVCSICGHRLTVGEKTPVQISAFPSVILPEFLYLGSYDNASRSELLKTQGITRILNTVPSCQNLYKNSFTYHCLPDDKTLPFDEGIQFLEQCEKDKARVLVHCMSGKNRSPAIVIAYLMKSRGWRLAQSYQWVKERRPSVELTEGSYQQLRELEHKIFVSNVGGSSVLPGFPPASSISFGFPKIHDSPSLPPFSGAGTTSIFAQPPLDIAPTAFTFGAGQMPNSATGSPFSSNPPNPNGTDIQMDGS* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1173 269 Pfam Dual specificity phosphatase, catalytic domain 54 177 IPR000340 GO:0008138|GO:0016311
Lan2g1173 269 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 269 IPR044212 GO:0009734|GO:0009738|GO:0033549|GO:0043407
Lan2g1173 269 ProSiteProfiles Dual specificity protein phosphatase domain profile. 45 181 IPR020422 GO:0006470|GO:0008138
Lan2g1173 269 Gene3D Protein tyrosine phosphatase superfamily 40 184 IPR029021 -
Lan2g1173 269 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 269 - -
Lan2g1173 269 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 180 IPR029021 -
Lan2g1173 269 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 102 170 IPR000387 GO:0016311|GO:0016791
Lan2g1173 269 CDD DSP_plant_IBR5-like 46 174 - -
Lan2g1173 269 SMART dsp_5 45 178 IPR020422 GO:0006470|GO:0008138
Lan2g1173 269 ProSitePatterns Tyrosine specific protein phosphatases active site. 123 133 IPR016130 GO:0016311|GO:0016791
Lan2g1173 269 MobiDBLite consensus disorder prediction 242 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1173 Lan-Chr2 22908638 22912414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1173 1 165 Protein tyrosine phosphatase (PTP) family AT2G04550 73.964 6.62e-96 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1173 K04459 - gmx:100808721 447.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1173 2 22908638 22912414 Lan11g0209 11 1340114 1344931 LSH
Lan2g1173 2 22908638 22912414 Lan9g1363 9 20727057 20730936 LSH