Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1145 ATGTGCTGTGCTTCAAAAAGCAAACTTTCTACCTCAAATCAAGTCATGGAAAGTGAGTCTCAGAAGATTTTGCTTGAATTGTCTGCGTTTGATGATGTTGAAGCTTTCAAAAGAGAAGTGGAAGAGCAGGGTTTGGATGTTAATGAGGAATGCTTTTGGTATGGTAGAAGAATTGGATCAAAGAAGATGGGGTATGAAAAGAGGACCCCTCTCATGATTGCTTCTTTGTTTGGAAGCACAAGGGTGGTTAAGTATATTGTTGAGATCGGCATGGTTGATGTGAACACGGCGTGTGGTTCTGATAGAGTCACTGCCCTCCATTGCGCTGTTGCTGGGGGTTCTGAATCCTCACTTGAGATTGTCAAGCTCTTGCTTGATGCCGGAGCAGATGCTGATTGCGTTGATGCTATTGGCAACAAGCCTGTTAGTCTGATTGCTCCTGCCTTTAATCTTTCGGCCAATTCCCGAAGGAAGGCCATGGAGTTGTTTCTCAGAGGAGGGGAAGGCAATCAAATCTTATATGAGATGGAACAAGTGCCATCTGAGAAAAAAGAAGGAGCTGATAAGAAAGAATATCCTGTTGATATATCGTTGCCTGATATAAACAATGGTGTATATGGAACAGATGATTTTAGGATGTATAGCTTCAAGGTGAAGCTTTGCTCGAGGGCTTACTCCCATGACTGGACCGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACAGAAATACCCTTATAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCACATGGTGTTTTTGAATCGTGGCTACATCCTGCGCAATACCGGACAAGGCTTTGCAAGGATGAGACTGGCTGCAATAGAAAAGTCTGCTTCTTCGCTCACAAACCTGAAGAGTTGCGCCCTGTGTATGCCTCCACTGGTTCAGCTATGCCATCACCAAAATCTTATTCAGCTGGTGCATTTGACATGACATCAATGAGTCCATTGTCTCTTAGTTCCTCATTGCCTATGCCAACTGTTTCGACACCACCGATGTCTCCTTTGGCCGCTTCTTCATCTGCCAAGAGTGGAAACTTGTGGCAGAACAAAATCAACTTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGGCTGAAGGCTGCTTTGAGTGCCAGGGATCTTGATCTTGAGATGGAAATGCTCGGTATAGGAAGTCCTAGCTATGCTCGTCAACAGCAGCAACAACAGCAACAACAGCAACAACAATTGGTAGATGAGATCACCAGGATCTCTTCCCCATCTTTCCGAAGCCGGATGGGTGATTTGAATCCAACTAACCTTGATGAACTCTTAGCATCTGCTGATGCTTCTATATTATCTCAATTACATGGACTTTCTGTCCAACCCTCAACACCAACACAGTTGCAAACTCAAAACTCGCTTCAGATGCGCCAAAACATGAACCACCTTCGCGCAAGTTACCCATCCAACAACATGCCTTCCTCTCCGGTGTATAAATCCTCACCATATGGGTTTGATTCATCGGCTGCTGTCGCGGCAGCAATGATGAATTCTAGGTCTGCTGCCTTCGCGAAGCGAAGCCAGAGTTTCATTGATCGTGGTGCTGCAACAAACCATCCTGGGATGTCTTCACCTTCCAACCCCTCCTGTAGGGTGTCCTCTGCCCTTTCAGATTGGGGTTCCCCGACTGGGAAGCTGGACTGGGGTGTAAACGGAGATGAACTGAGCAAGCTGAGGAAATCTGCTTCATTTGGGTTCAGAAACAACGGCGTATCATCCCCTAAGGCACAAACAGAACATGTTGAGCCAGATGTGTCATGGGTTCATTCATTGGTTAGAGATGAGAGGTCCGAGAGATTCGGCGCTGAGAAGCAGCATCAGCATCAGCATCAGCAATATGATCTCAGTAAAGAGATACTTCCACCATGGGTGGAGCAACTGTACATAGAGCAGCAGAAGCAAATGGTAGCATAA 2010 0.4672 MCCASKSKLSTSNQVMESESQKILLELSAFDDVEAFKREVEEQGLDVNEECFWYGRRIGSKKMGYEKRTPLMIASLFGSTRVVKYIVEIGMVDVNTACGSDRVTALHCAVAGGSESSLEIVKLLLDAGADADCVDAIGNKPVSLIAPAFNLSANSRRKAMELFLRGGEGNQILYEMEQVPSEKKEGADKKEYPVDISLPDINNGVYGTDDFRMYSFKVKLCSRAYSHDWTECPFVHPGENARRRDPQKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEELRPVYASTGSAMPSPKSYSAGAFDMTSMSPLSLSSSLPMPTVSTPPMSPLAASSSAKSGNLWQNKINFTPPSLQLPGSRLKAALSARDLDLEMEMLGIGSPSYARQQQQQQQQQQQQLVDEITRISSPSFRSRMGDLNPTNLDELLASADASILSQLHGLSVQPSTPTQLQTQNSLQMRQNMNHLRASYPSNNMPSSPVYKSSPYGFDSSAAVAAAMMNSRSAAFAKRSQSFIDRGAATNHPGMSSPSNPSCRVSSALSDWGSPTGKLDWGVNGDELSKLRKSASFGFRNNGVSSPKAQTEHVEPDVSWVHSLVRDERSERFGAEKQHQHQHQQYDLSKEILPPWVEQLYIEQQKQMVA* 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1145 669 Pfam Ankyrin repeats (3 copies) 64 133 IPR002110 GO:0005515
Lan2g1145 669 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 14 667 - -
Lan2g1145 669 Gene3D - 251 313 - -
Lan2g1145 669 SMART ANK_2a 101 133 IPR002110 GO:0005515
Lan2g1145 669 SMART ANK_2a 66 96 IPR002110 GO:0005515
Lan2g1145 669 SUPERFAMILY Ankyrin repeat 24 155 IPR036770 -
Lan2g1145 669 PANTHER UNKEMPT FAMILY MEMBER 14 667 IPR045234 -
Lan2g1145 669 ProSiteProfiles Ankyrin repeat profile. 101 136 IPR002110 GO:0005515
Lan2g1145 669 ProSiteProfiles Ankyrin repeat region circular profile. 101 135 - -
Lan2g1145 669 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 255 275 IPR000571 GO:0046872
Lan2g1145 669 ProSiteProfiles Zinc finger C3H1-type profile. 250 277 IPR000571 GO:0046872
Lan2g1145 669 Gene3D - 3 176 IPR036770 -
Lan2g1145 669 SMART c3hfinal6 285 308 IPR000571 GO:0046872
Lan2g1145 669 SMART c3hfinal6 250 276 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1145 Lan-Chr2 22703140 22706099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1145 24 663 C2H2 Transcription Factor Family AT5G12850 39.518 4.58e-139 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan2g1145 Ank_2 9.1e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1145 - - gmx:100783376 962.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1145 2 22703140 22706099 Lan11g0239 11 1526589 1528360 LSH
Lan2g1145 2 22703140 22706099 Lan9g1339 9 20576811 20579651 LSH