Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1106 ATGATGGAGGAATCTGAGTACTTGATGTGGATGAAGAGAAAACAATTGTTTAAGTCACACCTTCAAGCAGTTGAAGATGGAAGCAACAACAATTACTACTACTCATCATGGGCAGAGAGAGCCTTTGCAGAAGATGCAGGTAGGGTACTTGGTGGGAGCATGTGGCCTCCAAGATCATACTCTTGTACTTTCTGTAAAAGAGAGTTTAGGTCTGCTCAAGCACTTGGAGGTCACATGAATGTTCACAGAAGAGACAGGGCTAGGCTTAATCAAAATCTTAGCCCTAATAATGATCAAACCCTTGTTGAACTTGATCATCACAAAAATGATTGCAAATCATTAGGTACTCAATTATTTTCACAAATCTCATGCTCCCAGCAGCTACATTGTTGTCTTAATCCTAATTCTAGCCTTGCTACTTCAATCACAACAACTAGAATATCACCTTCTGGGCTCTCAGGTATATCTAAAGGTAAAAATTGTGGTCAGCATATTCTGTCTCCTTATTCTTCAACTATTAATATAGGGTCTCCTTATTCAGAACATGAAGGGATAGTGGATGCAACAGAAGAAGGCAAATTTAAAGGCTTGGGGTGTAATAATTATGTTGAAACAAGTTTGTCTGTGGGTTTGAGTTCTTCTATGTTTCCACAAAAGTCATCACCAATCATTCCAAGTGGGGACAAAACCATGATTAGTTGTAAAAGACTGAAGACTAACATTTCTTCACTGCCTGTGAAGTCCCTCAAACCATGTTCAAATGATAGAGGTGTGGATTTCCAATCAGCAGAAGTCATAATGGAAGACTTAGATCTTGAGCTCAGGCTAGGGAAACAACAGAAAGTTAAGTAG 852 0.3908 MMEESEYLMWMKRKQLFKSHLQAVEDGSNNNYYYSSWAERAFAEDAGRVLGGSMWPPRSYSCTFCKREFRSAQALGGHMNVHRRDRARLNQNLSPNNDQTLVELDHHKNDCKSLGTQLFSQISCSQQLHCCLNPNSSLATSITTTRISPSGLSGISKGKNCGQHILSPYSSTINIGSPYSEHEGIVDATEEGKFKGLGCNNYVETSLSVGLSSSMFPQKSSPIIPSGDKTMISCKRLKTNISSLPVKSLKPCSNDRGVDFQSAEVIMEDLDLELRLGKQQKVK* 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1106 283 SMART c2h2final6 60 82 IPR013087 -
Lan2g1106 283 Gene3D Classic Zinc Finger 56 114 - -
Lan2g1106 283 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 282 - -
Lan2g1106 283 Pfam C2H2-type zinc finger 60 84 - -
Lan2g1106 283 SUPERFAMILY beta-beta-alpha zinc fingers 57 87 IPR036236 -
Lan2g1106 283 ProSiteProfiles Zinc finger C2H2 type domain profile. 60 87 IPR013087 -
Lan2g1106 283 PANTHER OS07G0101800 PROTEIN 2 282 - -
Lan2g1106 283 ProSitePatterns Zinc finger C2H2 type domain signature. 62 82 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1106 Lan-Chr2 22350897 22351935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1106 1 277 C2H2 Transcription Factor Family AT5G06070 33.922 5.83e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan2g1106 zf-C2H2_6 1.6e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1106 - - lang:109340014 579.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1106 2 22350897 22351935 Lan11g0275 11 1802548 1803468 LSH
Lan16g0651 16 8572694 8573861 Lan2g1106 2 22350897 22351935 PCT