Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1100 ATGAGCTTTGTTTTCAGAGGAACAAGAGCTGATATAGAAAATGGATTTCCAGGATTTGCGCCTGAGAGGCGTGCATTGCGTGTTCATGCTGCACGTCCTAGTAACTCTAATTCACTCACTTTTCTTGTCACAGTTCTCCTTTTATTCATGATAATGAACTCCCAGCAGTTTTCACCGAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATCGCTACAATGTTAAGGATGTATGCAACATGTCAACAGCTACAAGCTCGGGCCCAAGCTCATGCAGCAGCAGCATCTGAGCTTCTCAGCCACACTGAACTACGGCTGCATATGCCATCATCAATAGAACTTGCAACCCGAGGGCGTCTGCAAGGCCTCAGACTTCAACTTGCACTTATCGATCGGGAGTTTGATGATCTAGATTATGAAACATTAAGAGCTCTGGATTCAGATAATGTTCATACCACACCTGCTATGTCTGACGAAGAGATAAATGCTCTTCCTGTCCATAAATACAAGGGTTATGGTCCGCAGAATAGTTCCACAATGCAACAGGCTTCATCTTCCACTACTGCTGAGAAGAGGGAAGATACTTCAAATGCAGGTGGGAGCATGAAAGCTTCTGATGATGGGCTGACTTGCAGTGTATGTTTGGAGCAAGTTAATGTCGGAGACACACTTCGAAGCTTGCCCTGTTTGCATCAGTTTCATGCTAATTGCATTGATCCCTGGCTGCGGCAACAAGGAACATGCCCTGTTTGTAAATTCAGAGCTGGGTCTGGATGGCATGAAAGTGGACATAATGATATTGCTGACATGGTTTGA 819 0.4493 MSFVFRGTRADIENGFPGFAPERRALRVHAARPSNSNSLTFLVTVLLLFMIMNSQQFSPNFLLWLVLGVFLIATMLRMYATCQQLQARAQAHAAAASELLSHTELRLHMPSSIELATRGRLQGLRLQLALIDREFDDLDYETLRALDSDNVHTTPAMSDEEINALPVHKYKGYGPQNSSTMQQASSSTTAEKREDTSNAGGSMKASDDGLTCSVCLEQVNVGDTLRSLPCLHQFHANCIDPWLRQQGTCPVCKFRAGSGWHESGHNDIADMV* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1100 272 Pfam Ring finger domain 211 253 IPR001841 -
Lan2g1100 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SDIR1 1 267 - -
Lan2g1100 272 PANTHER TARGET OF ERK KINASE MPK-1 1 267 - -
Lan2g1100 272 MobiDBLite consensus disorder prediction 173 207 - -
Lan2g1100 272 CDD RING-H2_PA-TM-RING 211 253 - -
Lan2g1100 272 SMART ring_2 212 252 IPR001841 -
Lan2g1100 272 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
Lan2g1100 272 SUPERFAMILY RING/U-box 207 255 - -
Lan2g1100 272 MobiDBLite consensus disorder prediction 173 204 - -
Lan2g1100 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 257 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1100 Lan-Chr2 22284565 22288498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1100 1 272 C3H Transcription Factor Family AT3G55530 74.638 6.51e-138 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1100 K16283 - gmx:100777936 431.409