Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1078 ATGGTTTTGTCTTGGACTAAAGGAAGAGTTTTTCGACGTGCCCACAAAGGGAAAGCGTTAAATTCCGTTGGTGATTTGGAGGTTGAGATTGTTACCCCGACTCATTTTCGATGTCCGGTCACACTAGACATGATGAAAGACCCCGTGACACTATCCACGGGGATATCTTACGACCGCGATAGCATTGAAAAGTGGTTCGAAGAAGGGAACAACACGTGCCCGGTTACCAAAAGGGTCCTCACAACCTTTGACATGATTCCAAACCATGCCTTGAGGAAGGTAATTCAAGATTGGTGTGTAGAGCATCGTTCTTTTGGTATAGAAAGGATCCCAACTCCTCGTATACCCGTGACACGGTACGAGGTTGAAAACACGTGTACTAGGATCATGTCTTGTGCCCAACATGGTGATGTAAACAAGTGTTTGGAATTGGTGAGGAAGATCAAGGCTTGGGGGAAAGAGAGTGAAAGGAACAAGAGGTGCATAGTGACAAGTGGTGCTTCTCTTGTGCTTGTTAAAGTCTTTGATCTTTTCTCATCACATGGTGGATCCATTGAGAACAACAACGTTAGTATCTTAGAAGAGATCTTAGGTGTTTTGACATGGATGCGCCCTCTTTCACAAGAGGGTAAGTCAATTTTAGTGTCATTGAACTCAATGAGTTGCATGGTTTGGTTCCTAAATGGTAAAACCCTTTCTTCAAGGCAAAGTGTTGTTTTGTTACTCAAAGAAGTGCCTCTTGTGGCATTGGAAAAAACTGAAGGAGTTGTTGAAGGTTTGGTTAAGATGATTGCAGAGCCTATTATGCATGCTGCTACTACCAAAGCATGCTTGGCAATAATTTTCAACATGGTTTCTTCATCCAAAAATAGAGAGTTAATCACACAAAGATTTGTGGAATTGGGTTTGGTTTCTATTTTGTTGGATGCACTTGTTGATGCTGAAAGAGGGGTGTGTGAGAAGGCTTTAGGGGTGCTTGATTGCATTTGTGACTTCAAACAAGGGAAGGAAATGGCTAAGTCAAATGCTTTGACACTTCCTCTAGTGATTAAGAAGCTTTTGAGGGTATCTGAGTTGAGTTCTAGTTTTTCAGTTTCTATTGTTTTTAAGCTTTGTGGTAAGACAGAAGAAGGGTTATTGATTGAAGCACTTCAAGTTGGGGTGTTTCAGAAACTACTTGTTTTGTTGCAAGTGGGTTGTGATGAGAGCACAAAGGAAAAGGCTTCTGAGTTGTTGAAATTGTTGAATGGTTATAGGAGCAAAGCAGAATGTGTTGATTCTTCATCATTGGATTTCAAGCACCTTAAGAAGCCATTTTAA 1320 0.4121 MVLSWTKGRVFRRAHKGKALNSVGDLEVEIVTPTHFRCPVTLDMMKDPVTLSTGISYDRDSIEKWFEEGNNTCPVTKRVLTTFDMIPNHALRKVIQDWCVEHRSFGIERIPTPRIPVTRYEVENTCTRIMSCAQHGDVNKCLELVRKIKAWGKESERNKRCIVTSGASLVLVKVFDLFSSHGGSIENNNVSILEEILGVLTWMRPLSQEGKSILVSLNSMSCMVWFLNGKTLSSRQSVVLLLKEVPLVALEKTEGVVEGLVKMIAEPIMHAATTKACLAIIFNMVSSSKNRELITQRFVELGLVSILLDALVDAERGVCEKALGVLDCICDFKQGKEMAKSNALTLPLVIKKLLRVSELSSSFSVSIVFKLCGKTEEGLLIEALQVGVFQKLLVLLQVGCDESTKEKASELLKLLNGYRSKAECVDSSSLDFKHLKKPF* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1078 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 11 439 - -
Lan2g1078 439 CDD RING-Ubox_PUB 36 77 IPR045210 -
Lan2g1078 439 SUPERFAMILY ARM repeat 126 420 IPR016024 -
Lan2g1078 439 PANTHER WDSAM1 PROTEIN 11 439 IPR045185 GO:0061630
Lan2g1078 439 Gene3D - 120 424 IPR011989 -
Lan2g1078 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 107 IPR013083 -
Lan2g1078 439 ProSiteProfiles U-box domain profile. 31 105 IPR003613 GO:0004842|GO:0016567
Lan2g1078 439 SMART Ubox_2 35 98 IPR003613 GO:0004842|GO:0016567
Lan2g1078 439 Pfam U-box domain 33 103 IPR003613 GO:0004842|GO:0016567
Lan2g1078 439 SUPERFAMILY RING/U-box 31 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1078 Lan-Chr2 22029777 22031367 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1078 27 439 U-box Gene Family AT5G37490 44.313 1.13e-113 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1078 - - gmx:100795913 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1078 2 22029777 22031367 Lan11g0321 11 2093647 2095277 LSH
Lan2g1078 2 22029777 22031367 Lan9g1270 9 19946663 19948222 LSH