Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1073 ATGGTCCTCTCCAAAACTGCACCCGAGACAGACGTCTCCATCCACTCAACATTTGCCTCACGCTATGTCCGCGTTTCCCTTCCCAGGTTCAGGATGCCGGAGCAGTCAATCCCCAAGGAAGCTGCATACCAGATCATAAATGATGAACTCATGTTGGATGGTAACCCAAGGCTTAACCTAGCTTCTTTTGTTACAACCTGGATGGAGCCAGAATGTGATAAGCTCATGATGGCTGCCATTAACAAGAACTACGTTGACATGGATGAGTATCCTGTTACCACTGAGCTTCAGAATCGGTGTGTTAACATAATAGCTCATCTTTTCAATGCACCACTAGAAGAGACTGAACATGCAGTTGGTGTTGGCACTGTTGGGTCATCTGAGGCTATTATGTTGGCTGGATTGGCATTTAAAAGGAAGTGGCAGAATAAAAGGAAAGAAGAAGGCAAACCCTATGACAATCCTAACATTGTTACTGGTGCCAATGTTCAGGTTTGCTGGGAGAAATTTGCAAGGTACTTTGAGGTGGAGTTGAAAGAGGTCAAGCTGCGAGAAGGATACTATATATTGGACCCTGAAAAGGCCATTGAAATGGTGGATGAGAACACCATTTGTGTTGCTGCCATCCTTGGTTCCACACTAAATGGAGAGTTTGAAGATGTCAAACGCTTAAACGATCTCCTATCTGAAAAGAATACGGAAACTGGATGGAACACCCCAATTCATGTGGATGCAGCCAGTGGTGGATTCATTGCACCATTTCTTTATCCAGAACTTGAGTGGGACTTTAGATTACCACTAGTGAAGAGCATCAATGTTAGTGGACACAAATATGGTCTTGTCTATGCTGGAATTGGTTGGGTCATTTGGAGAAACAAAGAAGACCTTCCAGAGGAACTTATTTTCCACATTAACTATCTTGGAGCTGATCAACCCACTTTCACCCTCAACTTCTCCAAAGGTTCTAGCCAAGTTATTGCTCAGTACTACCAACTAATTCGTCTTGGGTATGAGGGGTATAAACTTGTAATGGAAAACTGCAGAGACAACATGATAGTACTTAAAGAGGGACTCGAGAAAACAGATAGATTTGACATTGTATCCAAAGATGATGGTGTACCATTGGTGGCCTTCACTTTGAAGGACAACAGCCACTTTGATGAATTCCAAGTCTCTGATATGCTGAGGCGCTTTGGTTGGATAGTGCCAGCATACACAATGCCCCCAGATGCACAACATGTAACCGTGCTTCGCGTTGTCATTAGGGAGGACTTTTCGCGTGCCCTTGCCGAGCGCCTAGTTGTTGATATCCAGAAAGTGTTGCATGAGCTGGAAATGCTTCCTTCAAAGCTGCTCACTAAGACAGCCATAACGGTTGCTGGAGATGAAGGTTTAAATGATGATGCCAAAGTGGTGGTTGTTAAGAAGAGTGCTCTGGAGACCCAGAGAGAAATCACTACAGCTTGGAAGAAATTTGTTATGGATAGGAAGAAAATGAATGACAAGATGAATGGTGTCTGCTAG 1524 0.439 MVLSKTAPETDVSIHSTFASRYVRVSLPRFRMPEQSIPKEAAYQIINDELMLDGNPRLNLASFVTTWMEPECDKLMMAAINKNYVDMDEYPVTTELQNRCVNIIAHLFNAPLEETEHAVGVGTVGSSEAIMLAGLAFKRKWQNKRKEEGKPYDNPNIVTGANVQVCWEKFARYFEVELKEVKLREGYYILDPEKAIEMVDENTICVAAILGSTLNGEFEDVKRLNDLLSEKNTETGWNTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRNKEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGYEGYKLVMENCRDNMIVLKEGLEKTDRFDIVSKDDGVPLVAFTLKDNSHFDEFQVSDMLRRFGWIVPAYTMPPDAQHVTVLRVVIREDFSRALAERLVVDIQKVLHELEMLPSKLLTKTAITVAGDEGLNDDAKVVVVKKSALETQREITTAWKKFVMDRKKMNDKMNGVC* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1073 507 PANTHER GLUTAMATE DECARBOXYLASE 1 507 IPR010107 GO:0004351|GO:0006536|GO:0030170
Lan2g1073 507 Gene3D - 361 448 - -
Lan2g1073 507 PANTHER GLUTAMATE DECARBOXYLASE 1 507 - -
Lan2g1073 507 SUPERFAMILY PLP-dependent transferases 16 444 IPR015424 -
Lan2g1073 507 Pfam Pyridoxal-dependent decarboxylase conserved domain 33 381 IPR002129 GO:0016830|GO:0019752|GO:0030170
Lan2g1073 507 Gene3D - 66 360 IPR015421 GO:0003824
Lan2g1073 507 Gene3D - 1 65 - -
Lan2g1073 507 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 16 445 IPR010107 GO:0004351|GO:0006536|GO:0030170
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1073 Lan-Chr2 21993853 21996910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1073 1 507 Calmodulin-binding Proteins AT5G17330 82.643 0.0 883
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1073 K01580 - gmx:100796533 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan4g0226 4 3707073 3714879 Lan2g1073 2 21993853 21996910 LSH
Lan2g1073 2 21993853 21996910 Lan16g0594 16 7237503 7246921 LSH
Lan4g0226 4 3707073 3714879 Lan2g1073 2 21993853 21996910 PCT
Lan2g1073 2 21993853 21996910 Lan2g1073 2 21993853 21996910 PCT
Lan16g0594 16 7237503 7246921 Lan2g1073 2 21993853 21996910 PCT
Lan2g1073 2 21993853 21996910 Lan4g0226 4 3707073 3714879 PCT
Lan2g1073 2 21993853 21996910 Lan16g0594 16 7237503 7246921 PCT