Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1052 ATGTCCGTACAGTCAACATTGAAGCTCCAGAACCTGAAGCTACCAACATCAAGTTCAAATTTTGAGAGCAACCCATTATGCAAAACAAGGAAGAAAACTAAGAAGGTGGTTCGGATTATAGTAACTGATCATGATGCTACTGATTCAGATTCTTCAAGCGACGAAGAAGAAGAAAAGAAGCAAAAGAGAGTGAAGAGGGAAATCACACAGATCACTATGCACTTTCCCTTTTCTGATTCTCCGTCTTCTTCTTCATGTTCTCGCTCTTGTTCCTCCTTTTCTTCTTCATCAGAACAGGGTGGTTGTAAGAAGTTCAAGAGTACTAAGAAATCACTGTCCTCCACCACCACCAGCGCCATCGTACACCACAGCAACAAGTTCCGCGGCGTCCGGCAGCGACCGTGGGGCCGGTGGGCTGCTGAGATTCGTGACCCCAACCGGAGGAAACGGGTCTGGCTTGGAACGTTTGACACGGCGGAGGAGGCCGCCACCATGTACGACAAGGCGGCGGTGGAGCTGAAAGGACCCAACGCCATCACTAACTTCCCCACACCGGTGAAGGAGGAGGAGGTGATAACGCAGGCTGCTGCCGGGGAAAGCCTGAGTTTTGACGGCGGCGCGTTATATCCCGACACGGTGGCGTCGCCTACTTCTGTTTTACCTTATGACGGCGACTCGACGGCGTTCGACGGTTTCAGTTACGGAGACGTGGATGCGTTTGGTTTCAACATCGACATGCCGTTAAGTCTGCCGGACGTTAACGTTATGATGACGTGTCAGCAGTTTGGGAAGGAAGAGGTGTTCGGGGAGTTTGACTTTGACGAGTTTATGACGTGGCCCTGA 843 0.5113 MSVQSTLKLQNLKLPTSSSNFESNPLCKTRKKTKKVVRIIVTDHDATDSDSSSDEEEEKKQKRVKREITQITMHFPFSDSPSSSSCSRSCSSFSSSSEQGGCKKFKSTKKSLSSTTTSAIVHHSNKFRGVRQRPWGRWAAEIRDPNRRKRVWLGTFDTAEEAATMYDKAAVELKGPNAITNFPTPVKEEEVITQAAAGESLSFDGGALYPDTVASPTSVLPYDGDSTAFDGFSYGDVDAFGFNIDMPLSLPDVNVMMTCQQFGKEEVFGEFDFDEFMTWP* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1052 280 MobiDBLite consensus disorder prediction 42 64 - -
Lan2g1052 280 Gene3D AP2/ERF domain 125 184 IPR036955 GO:0003700|GO:0006355
Lan2g1052 280 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 MobiDBLite consensus disorder prediction 1 28 - -
Lan2g1052 280 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 277 - -
Lan2g1052 280 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Lan2g1052 280 CDD AP2 126 183 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 MobiDBLite consensus disorder prediction 1 26 - -
Lan2g1052 280 PIRSF PTI6 7 280 IPR017392 GO:0003700
Lan2g1052 280 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Lan2g1052 280 MobiDBLite consensus disorder prediction 77 108 - -
Lan2g1052 280 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI6-LIKE 29 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1052 Lan-Chr2 21800188 21801973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan2g1052 31 222 AP2-EREBP Transcription Factor Family AT4G27950 43.434 1.76e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan2g1052 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1052 K13434 - gmx:100800489 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1052 2 21800188 21801973 Lan2g1052 2 21800188 21801973 ECH
Lan2g1052 2 21800188 21801973 Lan11g0353 11 2540740 2542349 LSH
Lan2g1052 2 21800188 21801973 Lan2g1052 2 21800188 21801973 PCT
Lan2g1052 2 21800188 21801973 Lan11g0353 11 2540740 2542349 PCT
Lan11g0353 11 2540740 2542349 Lan2g1052 2 21800188 21801973 PCT