Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan2g1046 ATGGGAAACAAGTTCAAATTGTCAGATATGATTCCAAATGCATGGTTTTACAAGCTCAAAGATATGAACAAATCGAGGAAGAGAAATGGTTCTCATGTTGTGAAGAACAAAGCAACTCGATCCTCGACAGATCGTCGGCTACGCGACTCAACCTCACCAACCACATCCCAAAGGTCTCTCCCAAGATATTCACATTATGTCCCCACTATACCAAGCAGAACAGGTAAGTTATATAACACACCTATTCACACCAATGACTTGGACATGCCATTCATTGATTCGCCGCGATGGTCATCTAAGAGAAAGTCTCCGAGAAAAACCATTTACAAGCCTTCTCCCAAAGTTGTACCTTCTTCTTTCAAACCTAGTTCCAGCTGTGATTCTATAAATCAATGGACTAAGACATGTCAAGTTCAGTCTCCAGTCTATGATGTCTCTTCCTTCGAAAGTTCTTCCGAATCTGATATCCATGAATATGTTTATTCTGAGTCTGAGTGTGATACCTTTTCTGTTCCTGACTTGCTTAATGGAATAGACTCTAATTGCAGCTGCAGAGTTAGCTCTTCCACTAATGACATCATCATCGACATGAAAAATGAATGCTTCACTGGAAATCCGGAAAATTTAGATGGGTTTGATACAATTTCAGAGTTAGGCCTTGCTCCAATACATACAAAGCCAGTGATGTTTGATGATAAGGGGGCTGAATCCGCTGAGTTGAGAAGTTCAAGTTCAACTGAATTGGATGTGATGCAACTTCGTCGCACTCTCCCTGTCAAGTTTAGCAAAGAGGAAAGCAGTAAAACTCATAGAAGGAGAAAAGGAAATCGAATAGCTCGAAAATCATCTGCTAATTCTACAGGCGTAAAACTTAGAGTCAATTCTCCGAAATTGGCAAGCAGGAAAATTCAAGCCTATGCAAGAACTGTGCCATCCAGTAGTTCTAGAAAAGTTTCCAGGAATACAAACTTCCCAGAAGGATATGCTGTTATTAAGTCTTCATTTGATCCACAGAGTGATTTCAAGGAGTCGATGGTGGAAATGATCGCGGAGAACAATATCCGGGCATCAAAGGATTTGGAGGACTTACTTGCCTGCTATCTTTCCCTTAATTCAAGTGAATACCATGATCTCATTGTTAAAGCATTTGAGAAAATTTGGTTTGACATGGCTCAACTGAAAATGTGA 1188 0.4024 MGNKFKLSDMIPNAWFYKLKDMNKSRKRNGSHVVKNKATRSSTDRRLRDSTSPTTSQRSLPRYSHYVPTIPSRTGKLYNTPIHTNDLDMPFIDSPRWSSKRKSPRKTIYKPSPKVVPSSFKPSSSCDSINQWTKTCQVQSPVYDVSSFESSSESDIHEYVYSESECDTFSVPDLLNGIDSNCSCRVSSSTNDIIIDMKNECFTGNPENLDGFDTISELGLAPIHTKPVMFDDKGAESAELRSSSSTELDVMQLRRTLPVKFSKEESSKTHRRRKGNRIARKSSANSTGVKLRVNSPKLASRKIQAYARTVPSSSSRKVSRNTNFPEGYAVIKSSFDPQSDFKESMVEMIAENNIRASKDLEDLLACYLSLNSSEYHDLIVKAFEKIWFDMAQLKM* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan2g1046 395 MobiDBLite consensus disorder prediction 26 68 - -
Lan2g1046 395 ProSiteProfiles OVATE domain profile. 330 389 IPR006458 -
Lan2g1046 395 MobiDBLite consensus disorder prediction 48 63 - -
Lan2g1046 395 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 3 393 IPR038933 GO:0045892
Lan2g1046 395 PANTHER TRANSCRIPTION REPRESSOR OFP1-LIKE 3 393 - -
Lan2g1046 395 MobiDBLite consensus disorder prediction 262 287 - -
Lan2g1046 395 MobiDBLite consensus disorder prediction 93 115 - -
Lan2g1046 395 Pfam DNA-binding domain 1 41 IPR025830 GO:0003677
Lan2g1046 395 Pfam Transcriptional repressor, ovate 334 390 IPR006458 -
Lan2g1046 395 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 329 390 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan2g1046 Lan-Chr2 21712389 21714165 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Lan2g1046 Ovate 1.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan2g1046 - - gmx:100780926 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g1046 2 21712389 21714165 Lan2g1046 2 21712389 21714165 ECH
Lan2g1046 2 21712389 21714165 Lan9g1241 9 19692924 19694455 LSH
Lan2g1046 2 21712389 21714165 Lan2g1046 2 21712389 21714165 PCT
Lan2g1046 2 21712389 21714165 Lan9g1241 9 19692924 19694455 PCT
Lan9g1241 9 19692924 19694455 Lan2g1046 2 21712389 21714165 PCT